Ruegeria sp. TM1040: TM1040_1349
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Entry
TM1040_1349 CDS
T00359
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sit
Ruegeria sp. TM1040
Pathway
sit03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TM1040_1349
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sit03400
]
TM1040_1349
Enzymes [BR:
sit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TM1040_1349
DNA repair and recombination proteins [BR:
sit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TM1040_1349
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
MFD_D3
AAA_30
SecA_DEAD
RecG_dom3_C
AAA_16
UB2H
Motif
Other DBs
NCBI-ProteinID:
ABF64082
RoseoBase:
TM1040_1349
UniProt:
Q1GGY4
LinkDB
All DBs
Position
complement(1437358..1440807)
Genome browser
AA seq
1149 aa
AA seq
DB search
MSQQSVVMGGAPEGYDARLVLKEMARSAGPVLHIARDDKRLEAMRAALRFFAPEIPVVIF
PGWDCLPYDRVSPNADISAARMATLAALVHGLPDQFILLTTLNAAMQRVPAREVLKEAAF
SARVNSRIDEDALRKFLVRMGFSQSPTVMEPGDYAIRGGIIDIFPPGESGPVRLDLFGDT
LDGARRFDPATQRTTEKLEVVELAPVSEVILDEAAITRFRQNYRIEFGAAGSDDPLYEAV
SAGRKHQGMEHWLPFFHERLETLFDYMPDASVTLDDQLTPARLARWDSIVDQYETRKIAM
DTKGRMDSVYKPTPPRLLYLDDTTWETQIDAHRAVQFHPFPQASGPGVVDAGGRIGRNFS
PERQQENISLFGALADHIKARMTKGPVVVASYSEGARERLSGLIEDEGLAETIAVSDGRR
IGKSGLHLAVWALEHGFEAPDMTVISEQDVLGDRLIRKPKRRRKAENFLTEAQSLSPGDL
VVHVDHGIGRYIGLEVVTAAGAAHECLLLEYAEESKLYLPVENIELLSKYGHDEGLLDKL
GGGAWQAKKARLKERIREMADRLIRIAAERALRKAPAMDPPPHAWEEFSARFPYQETDDQ
LRAIEDVISDLNSGQPMDRLICGDVGFGKTEVAMRAAFVAAMSGLQVAIVAPTTLLARQH
AAAFKERFRGFPLEVRQLSRFVTSKEASQTREGMAKGTVDIVVGTHALLAKNIRFQNLGL
LIIDEEQHFGVAHKERLKQLRSDIHVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVDRLA
IRTYVTEFDAITIREALLREHYRGGQSFYVVPRISDLPEIEAFLQEQLPELSYVVANGQM
AAGELDDRMNAFYDGKYDILLATTIVESGLDIPTANTMVVHRADMFGLAQLYQIRGRVGR
SKTRAYAYLTTKPRQRLTDSAEKRLRVLGSLDTLGAGFTLASQDLDIRGAGNLLGEEQSG
QMRDVGYELYQSMLEEAIAKIKSGEVEGLVEGDDQWAPQINLGVPVLIPEAYVPDLDVRL
GLYRRLSSLTTKVELEGFAAELIDRFGKLPKEVNTLMLVVRIKAMCKKAGIAKLDGGPKG
ATIQFHNDKFASPQGLVEFIQSQNGLAKVKDNKIVVRRDWRKDSDKIKGAFAIARDLAEK
IIAERKKNR
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgtcacagcaatccgtcgtaatggggggcgcacccgaggggtatgacgcgcgcctggtt
ctgaaagaaatggcgcgaagcgccggcccggtgctgcatatcgcccgcgatgacaagcgg
cttgaagccatgcgcgcggctttgcggttctttgccccagagattccggtggtgatcttc
cccggctgggattgtctgccttatgaccgtgtctcgcccaatgctgatatttccgctgcg
cgcatggcgacccttgcggcgctggtgcacgggttgccggaccagttcatcctgctcacc
acgctgaatgccgccatgcaacgcgtccctgcgcgcgaggttttgaaagaagccgcattc
tccgcgcgggtgaactccagaattgatgaagatgcgttgcgtaagttcctggtgcgtatg
gggttctcccaaagcccaacggtgatggaacccggcgactacgccattcgcggcggcatc
atcgacatctttccgcccggcgaaagcgggccggttcggcttgatctctttggcgacacg
cttgatggcgcgcgccggtttgatcccgccacccagcgcaccaccgaaaagctcgaggtg
gtcgagcttgcgccggtttccgaggtgatccttgatgaggccgcgatcacccggtttcga
cagaattaccgcatagagttcggcgcggccggcagtgatgatccgctttatgaggccgta
agtgcagggcgcaaacatcaaggcatggagcattggttgccgttttttcatgagcggctt
gagaccctgtttgactatatgcccgatgcatcggtcacgctggacgatcagctgaccccg
gcgcgtttggcgcgatgggacagcatcgtcgatcaatatgagacccgcaaaatcgcgatg
gacaccaaggggcgcatggactcggtctataaaccgaccccgccacggcttctctatctc
gatgacaccacctgggagacgcagattgacgcccatcgcgcggttcaattccatccgttc
cctcaggcctccggccctggtgtggtcgatgcgggcggtcgcatcggacgcaatttttcg
cccgagcgccagcaggaaaacataagtctttttggtgcgttagccgaccatatcaaagcg
cggatgaccaaggggccagtggttgttgcctcctattccgagggtgcgcgtgaacgcctg
agcggcctcatcgaggatgagggcctcgccgagacgatcgctgtctcggacggacggcgg
atcggaaagtctggcctccacctcgcggtctgggcgctggaacacggttttgaagcaccg
gatatgacggtgatctccgaacaggacgtgcttggggatcggctgatccgcaagcccaag
cggcgccgcaaggcggagaatttcctcaccgaggcgcaatccctctctccgggggatctt
gtggtgcatgtcgatcacggcattggccgctatatcggacttgaggtcgtgactgccgcg
ggcgctgcacatgaatgtttgttgctggaatatgccgaagagtcaaagctctatcttccg
gttgaaaacatcgaactgctgtccaaatacggccatgacgaaggcctcttggataagctc
ggaggcggtgcctggcaggccaagaaagcccgcctcaaggagcgcatccgcgagatggcg
gatcgcttgatccgcattgccgctgagcgcgccttgcgcaaagcgcctgcgatggatccg
ccgccgcatgcctgggaagagttctccgcccgtttcccctatcaggaaaccgacgatcag
ctgcgcgccatcgaagatgtaattagcgacctcaactcgggtcagccgatggatcgtctg
atctgcggcgatgttggctttggcaagaccgaagtggccatgcgcgccgcattcgtggcg
gcaatgtccggccttcaggtcgcgattgttgcgccgaccacattgctcgcccgtcagcac
gctgcggctttcaaagagaggttccgtggatttcctctcgaagtcagacagttgtcgcgc
tttgtgacttcaaaagaggctagccagacacgcgaaggcatggccaagggcacggtcgac
atcgttgtggggacccatgcgctattggccaagaatatccgctttcagaaccttgggctg
ttgatcatcgacgaggagcagcattttggtgtggcccacaaagagcgcctaaaacagctg
cgatccgacatccatgtgctgacgctcaccgcaaccccgatcccgcggacacttcaactc
agcctgacaggggttcgggatctctcgattattggcacgccaccagtggatcgtctcgcg
atccgtacctatgtgaccgagtttgacgcgatcaccattcgcgaagcactgctacgcgag
cactaccggggcgggcagagcttttatgtggtgccgcggatttccgatctgcccgagatc
gaagccttccttcaggagcaactgccggagctgtcctatgtggtggcgaatgggcagatg
gccgccggtgaactcgatgaccggatgaacgccttttatgacggcaagtacgatattctt
ctggcgaccacgattgttgagtccgggctggatattcccaccgctaacacaatggttgtg
catcgcgccgatatgtttggactggcgcagctctatcagatccgtggacgtgtggggcgc
tccaaaacccgcgcctatgcctatctgaccacaaagccacgacaaagactcaccgatagc
gcagaaaagcggctacgtgtgttgggttcgctcgacactctgggggcaggttttactctt
gcatctcaggaccttgacatccgcggtgcagggaaccttcttggcgaggaacagtccggt
cagatgcgagatgtgggctatgagctctatcaatcgatgctggaagaggcgattgccaag
atcaaatccggtgaggtcgaggggctggttgaaggcgacgatcaatgggcgccgcagatc
aatcttggcgtgccggttctgatcccagaagcctatgtgccggatctcgacgtgcgtctg
ggcctatatcgccgcttgtcctcgctcacaaccaaagttgaacttgagggctttgccgcc
gagctgatcgaccgatttgggaaattaccaaaagaagtcaacacgttgatgttggtggtt
cggatcaaggccatgtgcaagaaggccgggattgccaagctcgatggtggccccaagggc
gcgaccatccagtttcacaacgacaagtttgcctcgccccaaggtctggttgagttcatt
caatcccaaaatgggttggcgaaggtcaaggacaacaagatcgtcgtgcgtcgtgactgg
cgcaaggacagcgacaagatcaaaggggcctttgccatcgcgcgtgaccttgctgaaaag
atcatcgcggagcgcaagaagaaccgctag
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