Ruegeria sp. TM1040: TM1040_3420
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Entry
TM1040_3420 CDS
T00359
Name
(GenBank) Hydrophobe/amphiphile efflux-1 HAE1
Organism
sit
Ruegeria sp. TM1040
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Gene cluster
GFIT
Motif
Pfam:
ACR_tran
SecD_SecF
RNA_pol_Rpb1_7
Motif
Other DBs
NCBI-ProteinID:
ABF62392
RoseoBase:
TM1040_3420
UniProt:
Q1GLS4
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Position
mega:complement(440986..444114)
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AA seq
1042 aa
AA seq
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MISEVFVRRPRLAMVISIVITIAGLIAMSAIPVAQYPEIAPPTVQVSASYSGADTATVEE
AIAVPIESQVNGVSGMRYMRSNSNNAGEYSLTVSFELGEDPDLATVNVQNRVKLAEPRLP
QAVRDQGLQIKKASTDILQVFTFHSDDPAHDQLFLANFVAINIIDELKRIDGVGDVFNYG
VRDYAMRIWLDPQKMSDREMSVDDIVSAIRSQHLQASAGRIGAAPLVEDGAGLQMTIVTK
GKLTSADEFENIILRSETDGSFVRVKDVARVELGAATYDVETRFEGTPSAPIAVFLSPGA
NAVAVAETVRHKLEELQERFPDGVSYSFIYDTAEFVEAMIKKVEHTLIEAFVLVGIVVFV
FLGRLRPTLIPLIAVPVSIVGTFAVLLALGYSANTISLLAMILAIGIVVDDAIVVVENVE
KVMHEEPHLSPADATRKAMKEITGPIIAITLVLLSVFVPVAFLPGSSGVLFRQFAVTISA
AMVISAINALTLSPALCAILMKPGEPIRFMRRVSDGIDAFSRGYGNLIRRLARLAVLSLA
LTALFGFATFRLGSITPSGFLPAEDKGFILAVATLPPGASLDRTTAVLEAGDALIRQEEG
VESIVTIAGFSLIDGGLASNAGIVFIRLADFADREDPAMHSTEIVRRITGRLQQIGGANF
IALNPPALPGAGATGGFEMMLEALQGQSPREMAAVMNGVVVSANQDPRLSAVYSTFEAAT
PQVRLDIDRDRLYTLGLTLPQVFSSLQGTLGGVYVNDITLFGKGFTVWVNGDADYRGNIG
AINNIRIRNASGEMVPVSSFATARLESGTRSQVRYNNYRAVAINGSPAAGVGDGDAITAM
EEIGAATIPDGFAYEWTGMASEVKSSAGQTGIVLGFALLFAYLFLVALYESWNVPVGVML
SVVAAVMVAIFGVWVAGSSLDVYVQIGIVVLIALAAKNAILIVEFALLRLGEGKSIEDAA
ALGAQERFRPVMMTSFAFIAGLVPLVTASGPGADSMFAVGVPVFAGMIGSAVIGVILIPL
LFIVFEHMRSWSRRASPAADSQ
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atgatttcagaagtctttgtccgccgcccacgcctggccatggtgatttccatcgtcata
accatcgccggcctgatcgccatgtctgccattccggtggcgcagtaccccgagatcgcg
ccccccaccgtccaggtcagtgccagctatagcggtgcggacacggcaaccgtagaagaa
gccatcgcggtgccgattgagagccaggtcaacggggtttcaggcatgcgttacatgcgc
tccaactccaacaacgcgggcgaatacagcctcactgtgagcttcgagttgggtgaagac
ccggatctcgccaccgtgaacgtgcaaaatcgcgtaaagttggctgaaccccgacttcca
caggcggtgcgcgatcagggccttcagatcaaaaaggcctccacggacatcttgcaggtc
tttacttttcactcagacgacccggcgcatgaccaactgttcctcgccaatttcgtcgcg
atcaacatcatcgacgagctaaagcgcatcgacggcgtaggggacgtgttcaactacggt
gtccgggactacgcgatgcgcatctggcttgatccgcaaaaaatgtcggatcgcgagatg
agcgtcgacgacatcgtaagcgccatacgcagccagcacctgcaggcctcggccgggcgg
atcggcgcggcccctcttgtggaagatggtgcgggcttgcagatgacgattgttaccaaa
ggcaagctgaccagcgccgatgagttcgaaaacatcatcctccgcagcgagaccgatgga
tcttttgtgcgcgtcaaggatgtggcccgcgtggagcttggcgcagcgacctacgatgtc
gagactcgatttgaaggcacgccgagtgcgccaatagcggtgtttctctcccccggagct
aatgcggtcgcggtggccgaaaccgtgcgccacaagctcgaagagttgcaggaacggttt
cccgacggcgtaagctacagctttatctatgacaccgccgaatttgtcgaagccatgatc
aagaaggtggaacacacgctgatcgaggcctttgtccttgtcggcatcgttgtgtttgtc
tttctgggacgcttgcgcccgacgctcattccgctgatcgcggttcccgtttcgatcgtg
ggcacattcgcggtgctcttggcgcttgggtattcggccaatacgatttcgctcttggcg
atgatccttgcaattggaatcgtggtggatgacgcgatcgtggtggtcgagaacgtcgaa
aaggtcatgcatgaagagccgcacctgtcgcccgccgacgcgacgcgcaaggccatgaaa
gagatcaccgggccgatcattgcaatcacgctggtgctattgtcggtctttgtgccggtg
gcattcctgcccggatcaagcggcgtcctgtttcgccagttcgcggttaccatctcggcg
gcaatggtgatttctgcgatcaatgcgctgacgctctctcctgccctctgcgcgatcctg
atgaaacctggcgaaccgatccgcttcatgcgtagggtctctgatgggatcgatgccttc
agccgaggctatggcaacctgatccgcaggctggcgcgtttggctgtattgagcctggcc
ctgacggcgctctttggctttgcgaccttccggctgggcagcattaccccctcgggattt
ctgccggcagaagacaagggtttcatccttgcggtcgcaaccctgccccccggtgcctcg
ttggatcggaccaccgccgtgctggaggcaggcgacgccctgatccgccaggaagagggc
gtcgagagcatcgttaccatcgcaggtttcagcctgatcgacggtggtctggcctcgaat
gcgggcatcgtctttatccgtcttgcggattttgccgatcgcgaagaccctgccatgcac
tcgacggagatcgtgcgacggatcacgggccgcctgcagcagatcggcggcgccaacttc
atcgccttgaacccaccagcgcttccgggcgccggggcgacgggcggctttgagatgatg
ctggaggcgctacaggggcaatcgccgcgcgagatggcagccgtcatgaacggggtcgtc
gtctccgccaatcaggacccgcgtctctcggcggtttactctacctttgaggcagccact
ccacaggtgcggctcgatattgatcgggaccggctctacacgctggggctgacactgccg
caggtgttttcttctctgcagggcacgttgggcggggtctacgtgaacgacattaccctc
tttggcaaaggctttacggtttgggtcaatggcgatgcagactaccgaggcaacattggc
gcgatcaacaacatccgcatccgaaatgcgtcgggcgaaatggtgccggtctcatccttt
gcgaccgcgcgcctagaatccggcacacgctctcaggtgcgctacaacaactatcgcgct
gtggcgataaacggcagcccggccgctggcgtgggcgatggcgatgcaattaccgcaatg
gaggaaatcggcgcagcaaccatcccggatgggtttgcctatgagtggaccggcatggcg
tccgaggtcaaaagctcggccgggcaaacggggattgttctgggctttgccctgctcttt
gcctatctgtttctggtcgcgctctacgagagctggaatgtcccggtgggcgtcatgctt
tctgtggtggccgcggtaatggtcgccatttttggcgtctgggtcgcgggatcttccctt
gatgtctatgttcagatcggaatcgtggttctcatcgcgctggcggccaagaacgcgatc
ctgatcgtagagtttgctttgttgcgattgggagagggcaaatcgattgaggacgccgcc
gccttgggggcgcaagagcgtttccgtccggtgatgatgacttcttttgcctttatcgca
ggtctggttccgctggtaactgcctcgggtccgggggctgacagcatgttcgccgttggg
gtgccagtctttgcggggatgatcggatccgctgtcattggcgtgatcttgatccccttg
ttgttcatcgtgtttgagcacatgcgcagctggagcaggcgcgcatctcctgctgcggac
agccaataa
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