Setaria italica (foxtail millet): 101756394
Help
Entry
101756394 CDS
T02818
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101756394
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sita03041
]
101756394
Enzymes [BR:
sita01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101756394
Spliceosome [BR:
sita03041
]
Complex A
U2 snRNP components
U2 related factors
101756394
Complex B
101756394
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Tet_JBP
FeoA
Motif
Other DBs
NCBI-GeneID:
101756394
NCBI-ProteinID:
XP_004972780
UniProt:
K3YFZ8
LinkDB
All DBs
Position
VI:4221198..4225647
Genome browser
AA seq
1065 aa
AA seq
DB search
MGSGDDERSTSKHHHRDKDKDRERSSSRHHRDKDRDRERSSSRHHREDGDRDRDRHHRDK
EKDRDREERKEREREERKAREREEREREKERAREEKEKERARRREERDREERDRSSRRRG
GEDGEDDEDRDRDRKRRRRSSHHHHHHRDAEPEAAPPREEEVDEEAAERRRQRKKEEDME
AEQQRLDDEMERRRRRVKEWQEKRREQQQQQDGGGAAGTSAAAAAEADVPKVGKKWTLDG
EESDEEGDKEDGNKAEENGGAGDMNVDLPNGGGDANGGAAMEEDEIDPLDAFMNSMVLPE
VAKMESAAAAMDTAPAEGVDDKNGKSTKDAVSNGDKKGPRRAMGRIMQGDDSESDYDDAD
NEGAGEEDEDDEEFIKRVKKTKAEKLAIVDHSKIDYQPFRKNFYIEVKDITKMTTEEVVA
YRKELELKVHGKDVPKPIKTWVQSGMTSKLLDTIKKLGFEKPMPIQAQALPIIMSGRDCI
GIAKTGSGKTLAFVLPMLRHVKDQPPVVPGDGPIGLIMAPTRELVVQIHSDIKKFSKVLG
INCVAIYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADR
MFDMGFEPQITRIVQNTRPDRQTVLFSATFPRQVEILARKVLTKPVEIQVGGRSVVNKDI
AQLVEVRPDSERFFRLLELLGEWYVKGKILVFVHSQDKCDSLLKELFQHGYPCLSLHGGK
DQTDRESTIADFKSNVCSLLIATSVAARGLDVKELELVVNYDVPNHYEDYVHRVGRTGRA
GRKGFAVTFISEEEERYAPDLVKALELSQQALPEDLKALADRFMAKVKQGTEQAHGTGYG
GSGFKFNEEEDEARKTAKKAQAREYGYEEDKSDSDSDEEGGVRKAGGDLAAQAIANAHAA
AAMVANKAAAGNANQQVPGTAAVPLIPLLAATNQQNDEATARALQAAMNLQQNLARIQAH
AVPEHYEAELEINDFPQNARWKITHKETLAPIQDWTGAAITTRGTYIPQGKIVGANERKL
YLFIEGPTESSVKKAKAELKRVLEDCANQALNLPGSAQTGKYSVI
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atgggctccggcgacgacgagcgctccacctccaagcaccaccaccgcgacaaggacaag
gaccgcgagcgctcctcgtcccgccaccaccgcgacaaggaccgggaccgcgagcgctcg
tcctcgcggcaccaccgcgaggacggcgaccgggaccgggaccgccaccaccgggacaag
gagaaggaccgggatcgcgaggagcggaaggagcgggagcgggaggagcgcaaggcgcgg
gagcgggaggagcgggagcgggagaaggagcgggcgcgggaggagaaggagaaggagcgg
gcccggcggcgcgaggagagggaccgcgaggagcgggaccggtcgtccaggcggcgcggg
ggcgaggacggcgaggacgacgaggaccgcgaccgcgaccgcaagcgccgccgccggtcc
tcgcaccaccaccaccaccaccgcgatgcggagccggaggcggcgccgccgcgggaggag
gaggtggacgaggaggcggcggagcggcggcggcagcggaagaaggaggaggacatggag
gccgagcagcaacggctcgacgacgagatggagcgccgccgccgccgcgtcaaggagtgg
caggagaagcgccgcgagcagcagcagcagcaggacgggggcggcgccgctggcacttcc
gctgcggcggcggccgaggctgatgtccccaaggtggggaagaagtggaccttggatggg
gaggagtccgatgaggaaggggataaagaggacggcaataaggctgaggagaatggcggc
gcaggtgacatgaatgtggatttgccgaatgggggtggcgatgccaacggtggtgctgct
atggaggaggatgagattgatccgctcgatgccttcatgaactccatggtgctgccggag
gttgcgaagatggagagtgctgcggcagcaatggatactgcccctgctgaaggtgtggat
gataagaatggtaagagcacgaaggatgctgttagtaatggggataaaaaggggccaagg
agagcgatggggagaattatgcaaggggatgattcagagtcggattacgatgatgctgac
aatgagggggccggagaggaggatgaggatgatgaggagttcataaagcgtgtcaagaag
acaaaggcagagaagcttgcaattgttgaccactcaaagattgactaccaaccgttccgg
aagaatttctatattgaggtgaaggacattaccaagatgacaaccgaggaagtggtggcc
tacaggaaggagttggagctcaaggtgcatggaaaagacgtgcccaagccaataaagaca
tgggtgcagagtgggatgactagcaagctccttgacaccatcaagaagcttggttttgag
aaaccaatgcctatacaggcgcaagcgttgccgatcataatgagtggacgtgattgtata
ggaattgcaaagactggatctggcaagactctagcatttgtcctcccgatgctgaggcat
gttaaagaccagccgcctgttgttcctggagatggccctattgggcttattatggctccc
accagagagcttgtggtgcagatacattcagatattaagaagttctctaaggtactcggc
atcaactgtgttgcaatctatggaggttcgggggttgcgcagcagattagtgaattgaag
agaggtgccgaaattgttgtttgtacaccaggaaggatgattgatatcctttgcactagc
agcggaaaaataactaaccttcgtagggtgactttcttggtgatggatgaagctgatagg
atgtttgacatgggttttgagcctcagattactcggatagttcagaataccaggccagat
aggcagacggttcttttctctgccacatttccacggcaggtggagatactggcacgcaag
gtgctaactaagcctgttgaaattcaggtgggtgggaggagtgttgtgaacaaagatatc
gcacaactggttgaggtgcgaccagacagtgagaggttcttcaggctgttagagttgctt
ggtgaatggtatgttaaggggaaaattcttgtttttgttcactcgcaagataaatgtgat
tctctgctcaaagagctattccagcatgggtatccatgtctgtctcttcatggtggtaaa
gatcaaactgaccgtgaatcaactattgctgatttcaagagcaatgtctgcagcttgctg
attgctactagtgttgctgctaggggcttagatgtgaaagaacttgagctggttgtcaat
tatgatgtcccaaaccattacgaggactatgttcatcgtgttgggcgaacagggcgtgct
ggaagaaagggctttgctgtgacttttatttctgaggaagaggagcggtatgcacctgac
cttgttaaggccctggagctctctcagcaagctcttcctgaagacctgaaagccctagct
gatcggtttatggcgaaggtgaagcagggcacagagcaggcccatggtacaggttatggt
ggtagtggttttaagttcaatgaggaagaggatgaagcccgaaagactgcaaagaaggct
caggcaagggaatatggatacgaagaagacaagtcagattcagattctgatgaggaaggt
ggggtgcgtaaggcgggaggtgacctggcagcacaagctattgccaatgctcatgcagct
gctgctatggttgcaaacaaggccgctgctggtaatgctaaccagcaagtaccaggaact
gcggcagtccccttgattcctttacttgctgcaactaaccaacaaaatgatgaagccaca
gctcgtgcacttcaggctgcaatgaacttgcaacaaaatctggcgaggatacaggctcat
gcagttccagaacactatgaggctgaacttgagattaatgatttcccacagaacgcccgc
tggaagatcactcacaaagagacattggctcctattcaggactggactggtgctgctatc
actacaaggggaacatatattcctcaaggaaaaattgttggtgcaaatgagcgcaagctg
tacttgtttatcgagggcccgacagagtcatctgtgaagaaggcgaaagcagaattgaaa
cgtgttcttgaagattgtgccaaccaagctctgaatctccctggatctgctcaaactgga
aagtattctgttatttaa
DBGET
integrated database retrieval system
