Setaria italica (foxtail millet): 101777488
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Entry
101777488 CDS
T02818
Name
(RefSeq) RNA polymerase II transcription factor B subunit 2
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03022
Basal transcription factors
sita03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
101777488
09124 Replication and repair
03420 Nucleotide excision repair
101777488
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sita03021
]
101777488
03400 DNA repair and recombination proteins [BR:
sita03400
]
101777488
Transcription machinery [BR:
sita03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
101777488
DNA repair and recombination proteins [BR:
sita03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
101777488
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
101777488
NCBI-ProteinID:
XP_004972571
UniProt:
K3YHK5
LinkDB
All DBs
Position
VI:complement(1722221..1729338)
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AA seq
451 aa
AA seq
DB search
MPQVLVVARNFMDMVAALPASKLDMLYDSAFICEAVLRSLPPLAKKYALQMLYVLAPVAA
AAMEEWVLDEYASKHRVAIDKLLQLRVFVEVRDRRKEVSYKMNQKFQGNMQKYLVDGGSL
PREPIPLSVTGRLPASADLEAYALDQWECFLLQLINSSQVEKGTSFSSSMMKTFQRGLLS
SRDGEAPKLTENGFQFLLMETNAQLWYIMREYISSAEERGVDPTELISFLLELSFHKLGA
AYSLNTLTDVERIAIRDLAELGLVKLQQGRKDSWFIPTQLATNLSASLSDSSSSKEGFVV
LETNFRMYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKESIYGAFENGITAEQIISFL
RQNAHPRVVDKIPVVPENVTDQIRLWETDRNRVEMIPSHLYEDFPSKEWFEQCCDHARDH
GYLLWEDSKRMRLIVRGEFHPEMREFLRRQR
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaggttttggtggtggcgcggaacttcatggatatggtggctgcgctgcctgcc
tccaagcttgacatgctctatgactctgccttcatctgtgaggctgtactcaggtcactc
ccgccactagcgaagaagtatgcactgcagatgctgtacgtgttggcaccggtggccgct
gcagctatggaagagtgggtgctcgatgaatatgcttccaagcacagggtcgccattgat
aagctgctccaactcagggtctttgtcgaagtgcgcgatagacgaaaggaggtgagttac
aagatgaatcaaaagttccagggtaatatgcagaagtatttggttgacggtggaagttta
ccaagggaaccgataccgttaagtgtcactggtagattgcctgcatcagcagacctggaa
gcctatgctcttgatcaatgggagtgcttcttgttgcaattgatcaattcatctcaagtc
gaaaaaggaacaagtttcagctcctccatgatgaagacatttcagcgcggccttctgagt
tcaagggatggtgaagctccaaagttgactgagaatggcttccaatttcttcttatggaa
acaaatgcacaactttggtacataatgagagaatacatttcctctgcagaggaacgtgga
gtggaccctacggagctgatatcatttctcttggaacttagttttcataaattgggagcg
gcttatagtttgaacactctgactgatgttgaacgaattgccatcagggatcttgccgag
ttgggattagtcaaactgcagcagggtcgaaaggatagctggttcattcctacccaatta
gctacaaatctctcagcaagcttgtcagattcatcgtccagcaaagagggctttgttgtt
ttggagacaaactttagaatgtatgcatactctacctccaaattgcactgtgaaattctg
cgccttttttcaagggtggagtatcaacttccaaacctcatcgtgggagctattacaaaa
gaaagtatttatggtgcttttgagaatggaataactgctgagcagataatttcatttctt
aggcaaaatgctcaccctcgtgttgttgacaagatacctgttgttccggagaatgtcact
gatcagattaggctgtgggaaactgaccgtaacagggttgagatgattccatcacatttg
tatgaagattttcctagcaaggaatggtttgaacaatgctgtgatcacgcaagagatcat
ggatacttgctgtgggaggactctaagagaatgaggctgattgtacgaggggagttccat
cctgaaatgagggagttcctccgcaggcaaagatga
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