Solibacillus silvestris StLB046: SSIL_2188
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Entry
SSIL_2188 CDS
T02162
Name
(GenBank) predicted eukaryotic-type DNA primase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
siv
Solibacillus silvestris StLB046
Pathway
siv03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
siv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SSIL_2188
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
siv03400
]
SSIL_2188
Enzymes [BR:
siv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SSIL_2188
DNA repair and recombination proteins [BR:
siv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SSIL_2188
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
PRD
Motif
Other DBs
NCBI-ProteinID:
BAK16611
UniProt:
F2F5S8
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Position
complement(2258294..2260135)
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AA seq
613 aa
AA seq
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MKPMLLTDVPDIPLGDDWLYEAKYDGYRCILVWDKGKNIPEMKSRNGNVLNEKFPEIIRF
CKSIYAEIEPYLPLIFDGEIVYLINHFQSKFSFVQKRGKMTNQKNIESNAKTFPCHYIVF
DLLKLKGKDKGNSRLTTRKQLLSDLFERLNLLDTVQYNDPKRLQAIDVFEDPHLIWQKVT
SHNGEGIIAKKRSSKWLENTRTKSWQKIKNWKHVNVILTKFDQLNGFFNGAIYQEDMLME
VVSFKHGLSEEESKTLIAFFKSKGTVKEKSIFEIPPSICVTVACIDFDGSKLREPRFHSF
QHHLDVTECNWQQMQRQLNPIPESVIVTHPDKPVFPASHITKDDYLYYLQTVAPMMMPFL
QDRLLTVIRYPHGVPGESFYQKNYIENLPEFITTQLVDDTHFILCNNLESLLWLGNQLAL
EFHIPFQPVTSEQPTEIVFDLDPPSVHEFGLAVDAAVKFKTIMDYFKLTSFIKTSGGKGM
QIYIPLPLHTFSYEDTGVFTEFICRFLVQQFPNSFTIERLKKNRGKRLYLDYVQHREGKT
IVAPYSPRGNNKGLIATPLLWEEVNEGLTPDLFTIPNIIKRLERMADPFKNFREVGERQP
FRAALDQITGKQV
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
gtgaaacctatgttattaaccgatgtaccggatattccattaggtgacgattggttgtat
gaggcaaagtatgacggttatcgctgtattttagtttgggacaagggtaaaaatattcct
gagatgaaaagccgaaatgggaatgtattaaatgaaaaatttccagaaatcattcgtttc
tgtaagagtatttatgctgaaatcgaaccatatttaccgctgatttttgacggagaaatc
gtttatttaatcaatcattttcaaagtaaattctcgtttgtgcaaaagcgcggaaaaatg
acgaatcaaaaaaatatcgaatcgaatgcaaagacatttccatgtcattatattgtgttt
gatttactgaaattaaaagggaaagataagggaaatagccgattaacaacaagaaaacaa
ttattatccgatctttttgaacggctcaatttacttgacactgttcaatataatgatcca
aagagacttcaagcgattgatgtatttgaagatccgcatttaatttggcaaaaagtaacg
tcccataatggggaagggatcattgcgaaaaagcgcagcagcaaatggctggaaaatacg
agaacgaaaagctggcagaaaataaaaaactggaaacatgtaaatgtcatcctcacgaaa
tttgatcaattaaacggtttttttaatggtgcaatctatcaagaagacatgcttatggaa
gtggtttcgtttaaacatggtttgtcagaggaagaaagcaaaacattgatcgcctttttt
aaatcgaaagggacagtgaaggagaaaagtatattcgagattcccccttcaatttgcgta
accgttgcctgtattgatttcgatggcagtaaactgagagagccgcgctttcattcgttc
caacatcatctggacgttaccgagtgcaactggcagcaaatgcagagacaattaaacccg
attccggaaagtgtcatcgtcacccatccggacaaaccagtttttcctgctagccatatt
acaaaggatgactatttgtattatttacagacggtagcgcccatgatgatgccttttctg
caggaccggttattgacggtcatccgttatccgcacggagtacccggtgaaagcttctac
cagaaaaactatatcgaaaacttgccggaatttatcacaactcagttagtagacgacacc
cattttatcttgtgcaataatctcgaatccctactgtggttgggaaatcagctcgctttg
gaatttcatattccgtttcagccggtcacttcagaacagccgacagaaattgtattcgat
ttggatccaccttccgttcatgagtttggattggcggtagatgctgctgtaaaatttaaa
acgataatggattactttaaactgaccagctttattaaaacgtctggcggaaagggcatg
caaatttatatcccattgccactgcacacattttcttatgaagatacgggtgtatttacc
gagtttatatgccgatttctcgtacagcaatttcctaattcgtttacaatcgagcggttg
aagaaaaacaggggtaaaaggctgtatttggattatgtccagcatcgggaaggcaaaacg
attgtggcaccatattcaccacgcggcaataataaaggattaatcgccactccattatta
tgggaagaagtaaacgaaggattaacgcctgatcttttcacgattccaaatataataaaa
cgtctggaacgcatggcggatcctttcaaaaatttcagggaagtgggtgagcggcagcca
ttccgagctgctctagatcaaataactgggaaacaagtgtag
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