Solibacillus silvestris StLB046: SSIL_3158
Help
Entry
SSIL_3158 CDS
T02162
Symbol
ykqC
Name
(GenBank) predicted hydrolase of the metallo-beta-lactamase superfamily
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
siv
Solibacillus silvestris StLB046
Pathway
siv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
siv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SSIL_3158 (ykqC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
siv03019
]
SSIL_3158 (ykqC)
Messenger RNA biogenesis [BR:
siv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SSIL_3158 (ykqC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
DUF4453
DUF5548
CFAP54_N
DUF5532
Motif
Other DBs
NCBI-ProteinID:
BAK17581
UniProt:
F2F816
LinkDB
All DBs
Position
3223797..3225464
Genome browser
AA seq
555 aa
AA seq
DB search
MKFVKNDQAAVFALGGLGEIGKNTYAVQFQDEIILIDAGIKFPEDDLLGIDYVIPDYTYL
VRNVDKIKGLFITHGHEDHIGGIPYLLRQVNIPVYGGKLALGLLRNKLEEHGLLRTTKLI
EFKENDVIKFRKTAVSFFRTTHSIPDAYGIVIKTPPGNIVHTGDFKFDFTPVGEPANLTK
MAEIGRDGVLCLLSDSTNAEKPDFTMSERTVGKSIDEIFRKVDGRIIFATFASNIHRLQQ
ATDAAVKYGRKVAVFGRSMDNAITIGRELGYITAPKETFVDIQSLNRLPANEVMILCTGS
QGEPMAALSRIANGTHRQIQIQPGDTVVFSSSPVPGNTMSVNKIINLLFRAGAEVIHGAL
NNIHTSGHGSQQEQKLMLRLMKPKFFMPIHGEYRMLKIHTELAEACEVPLENSFVMENGD
VLALSANEAHVAGRIPSGDVYIDGNGIGDIGNIVLRDRRILSEEGLVIVVVSVDMAKNKI
VSGPDIISRGFVYMRESGMMINEAQKMLNHHLNSTIQEKDTQWNDLKNEITDVLGPYLYE
KTKRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcgttaagaatgatcaagcggctgtattcgcactcggcggactgggcgaaatc
ggcaaaaacacatatgcagtacaattccaagatgaaatcatactaatagatgcaggtatt
aagttccctgaagacgatttgcttggcattgactatgtaattccagactatacgtattta
gttcgaaacgtagacaaaatcaaaggcttatttataacacatggtcacgaagatcatatc
ggtggtattccttatttattacgtcaagttaacattcctgtatatggagggaaacttgca
ctaggtctacttcgcaacaaattagaagagcatggcttattacgtacaacaaaactgatt
gaatttaaagagaatgatgtcattaaattccgtaaaacagctgttagcttcttccgtaca
acacatagtattccagatgcatatggtattgtcatcaagacaccaccgggtaatattgtg
catactggtgactttaagtttgactttactccagtaggcgagcctgctaacttgacgaaa
atggcggaaatcggccgcgatggcgttctttgtttactatcggatagtacaaacgccgaa
aaacctgatttcacaatgtccgagcgtacagttgggaaaagcattgacgaaatcttccgt
aaagttgatggacgtattatatttgcaacattcgcttccaatatccaccgtttacaacag
gcaacagatgcagctgtaaaatatggccgtaaagttgctgtgtttggtcgatcaatggat
aatgcgattacaatcggccgtgaattaggctatattacagctcctaaagaaacatttgtc
gatattcaaagcttaaaccgcttacctgcaaatgaagtgatgattttatgtactggttct
caaggtgaaccaatggctgctttatcacgtattgctaacggtacacaccgtcaaattcaa
atccagcctggtgatacggttgtcttctcatcttctccggttcctggtaacacgatgagc
gtaaacaaaattatcaacttattattccgtgctggtgcagaagttatccacggtgcttta
aacaatattcatacatcaggtcatggttctcaacaagaacaaaagcttatgcttcgttta
atgaaaccgaaattctttatgccgattcatggtgaatatcgcatgttgaaaattcacact
gaattagctgaggcttgtgaagttccattggaaaactcattcgttatggaaaatggggat
gttcttgcattaagtgcaaatgaagcacatgttgcaggacggattccttcaggcgatgta
tatatcgatggtaatggcatcggggatatcggtaatatcgtattacgcgatcgtcgaatt
ctatcagaagaagggttagtcatcgttgtcgtaagtgtcgatatggctaaaaacaaaatt
gtttctggtccggatattatttctcgcggctttgtgtatatgcgtgaatcgggcatgatg
attaatgaagcgcaaaaaatgctgaaccatcatttaaacagcacgattcaggaaaaagat
acacaatggaatgatttgaaaaatgaaattaccgatgtattaggcccatatttatacgaa
aaaacgaaacgtcgtccaatgattttaccgatcattatggaagtataa
DBGET
integrated database retrieval system
