Sinorhizobium sp. RAC02: BSY16_1130
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Entry
BSY16_1130 CDS
T04514
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
six
Sinorhizobium sp. RAC02
Pathway
six03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
six00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BSY16_1130 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
six03400
]
BSY16_1130 (mfd)
Enzymes [BR:
six01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BSY16_1130 (mfd)
DNA repair and recombination proteins [BR:
six03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BSY16_1130 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
UB2H
AAA_22
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
AOF91084
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All DBs
Position
1198716..1202228
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AA seq
1170 aa
AA seq
DB search
MIPGFSPERIAAAGHPLTIGAVPSGVEPLILADLARKTGPIAFVLSDGQRISDLEQMLGF
VAPDIPVLTLPGWDCLPYDRVSPSAEVSARRLSALSALIAHQKKPHAAIVLVTVNAMLQK
TAPRAIIESLAFSARPGNQIRMDDVAARLERNGFDRVATVREVGEYAVRGGILDVFVPSS
GEPVRLDFFGDTLESIRSFDPASQRTTGQARSLDLNPMSEVTLTPETISRFRTQYLASFG
AATRDDALYLAVSEGRRYAGMEHWLPLFYDELETTFDYLEGFRIVTDHTVRESAVERSRL
VRDYYDARVASATPGKGQVAQSTPYKPVPPGQIYLDAERFAQELDQRNAIRLTPFNEHDG
EARHVEAIEARPGVRWARPSGSEDAEGARVNVFGQAVTHIADKRASGAKVLVTGWSEGSL
DRLLQVLSEHGLANVVPVEKFADLRKLKPGEAGSAVLSLESGFETGDIVVIGEQDILGDR
MVRRSKRRKRGADFITEVAGLDEGSIVVHAEHGIGRFVGLRTIEAAGAPHACLELVYADD
AKLFLPVENIDLLSRYGGEGSDAMLDKLGGVAWQARKAKLKKRLLDMANGLIQIAAARLV
RHAPVLVSPEGIYDEFAARFPYDETDDQANAIDAVREDLGAGRPMDRLVCGDVGFGKTEV
ALRAAFIAAMNGVQVAVVVPTTLLSRQHFKTFTDRFRGLPIRLQQASRLVGSKELALTKK
ELSEGKTDIVVGTHALLGSSIKFANLGLLIIDEEQHFGVKHKERLKDLKSDVHVLTLSAT
PIPRTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDPLVIRETLMREHYRGGQSFYVCP
RLSDLSEIHDFLRQDVPELKVAVAHGQMPATELEDIMNAFYEGRYDVLLSTTIVESGLDV
PTANTMIIHRADMFGLAQLYQLRGRVGRSKVRAFALLTLPVNRTLTGMAERRLKVLQSLD
TLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEIKGDEEVADSGW
SPQISVGTPVMIPDDYVPDLHLRLGLYRRLGEITELGDIDAFGAELIDRFGPLPLEVQHL
LKIVYIKSLCRVANVEKLDAGPKGVVVQFRNKQFPNPAALVGYISKQGTLAKIRPDQSLF
LSRDYPTPERRLTGAAQVMTQLAGLAKQGA
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgatccccggtttttcccctgaacgcattgcggctgctggccatccgctgaccatcggt
gccgtgccgtcaggcgtcgagccgctgatccttgccgaccttgcgcgcaagaccggaccg
atcgccttcgttctgtcggacggccagcgcatttccgatcttgaacagatgctcggcttc
gtcgcgcccgacattccggtgctgacgctgcccggttgggactgtttgccctatgaccgt
gtgtcgccgagcgccgaagtgtccgcacgtcggctttccgcgctctcggcgttgatcgcc
caccagaagaagccgcatgcggcgatcgtgctggttaccgtcaacgccatgctgcagaag
accgcgccgcgcgcgatcatcgaaagcctcgccttctcggcccggcccggcaaccagatc
cgtatggacgatgtggccgcgagactggagcgcaacggcttcgatcgtgtcgcaaccgtg
cgcgaggtcggcgaatatgccgtgcgcggcggcattctcgatgtcttcgtgcccagcagc
ggtgaaccggtgcgtctcgatttcttcggtgacacgctggaatcgatccgttccttcgac
ccggccagccagcgcacgacgggccaggcgcgttcgctcgacctcaatccgatgagcgaa
gtaacgctgacgccggagacgatctcccgtttccgcacgcagtatctcgcgtccttcggc
gctgcgacacgcgacgatgcgctctacctcgccgtctccgagggccggcgctatgccggc
atggagcactggctgccgctgttctacgacgagctggagacgaccttcgactatctcgaa
ggctttcgcatcgtcaccgaccatacggtgcgggaatcggcggtcgaacgctcgcgcctg
gtgcgtgactattacgatgcccgcgtggcatccgcgacgcccggtaaggggcaggtggcg
cagtccacgccctacaagcccgttccgcccggccagatctaccttgatgccgagcgcttc
gcgcaggaactggatcaacgcaacgccatccgcctgacgccgttcaacgagcatgacggc
gaagcgcggcatgtcgaggcgatcgaggcgcgaccgggcgtgcgctgggcacggccgagc
ggcagcgaggatgccgagggcgcccgcgtcaacgtgttcggccaggccgtgacgcatata
gcggacaagcgcgcgtcgggtgccaaggttctcgtcacgggctggtcggaagggtcgctc
gaccgtctgttgcaggtgttgtccgaacacggcctcgccaatgtcgtgcccgtcgaaaaa
tttgccgacctgcgcaagctgaaaccgggtgaggcggggtctgccgttctcagcctggaa
agcggttttgagaccggtgacatcgtcgtcatcggcgagcaggatattctgggcgaccgc
atggtgcggcgctcgaagcggcgcaaacgcggtgcggatttcatcaccgaggtcgccggg
ctggacgaaggctcgatcgtcgtgcatgccgaacacggcatcggccgcttcgtcggcctg
cggaccatcgaggcggcaggcgcaccgcatgcctgcctcgaactcgtctacgcagacgac
gcaaaactcttcctgccggtggagaacatcgacctgctctcgcgctacggcggcgagggc
agcgatgcgatgctcgacaagctcggcggtgtcgcctggcaggcgcgcaaggccaagctc
aagaagcgcctgctcgacatggcgaacggcctcatccagatcgccgccgcgcgcctggtg
cgccatgcgccggtgctcgtgtcgccggaaggcatttacgacgagttcgccgctcgcttc
ccctatgacgagaccgacgaccaggcgaatgccatcgatgccgtgcgcgaggatctcggc
gccggccggccgatggaccgcctcgtctgtggcgacgtcggtttcggcaagacggaggta
gcgctacgtgccgccttcatcgctgcgatgaacggcgttcaggtcgccgtcgtcgtgccg
accacgctgctctcgcgccagcatttcaagacgttcaccgaccgtttccgcgggcttccg
atccgcttgcagcaggcctcccgcctcgtcggctcgaaggaactggcgctgacgaagaag
gaactgtccgagggcaagacggatatcgtcgtcggcacccatgcgctgcttggtagctcg
atcaagtttgccaatctcggccttttgatcatcgacgaggagcagcatttcggcgtgaag
cacaaggagcggctgaaggatctgaagagcgatgtgcatgtgctgacgctttctgcgacg
cccatcccgcgcacgctgcagctcgccatgacgggcgttcgcgaactgtcgctgatcacc
acgccgccggtcgaccgcatggcggtgcgcacctttatctcgccgttcgacccgttggtc
attcgagagaccttgatgcgcgagcattatcgcggtggccagagcttttatgtctgcccg
cgtcttagcgatctctcggaaatccatgatttcctgcgccaggatgtgccggaactgaaa
gtggctgtcgcacacggccagatgccggcaaccgagctcgaagacatcatgaacgccttc
tacgagggccgttacgacgtgctgctctcgacgaccatcgtcgaatccggtctcgacgtg
ccgaccgcgaacacgatgatcatccaccgcgccgacatgttcggcctcgcccagctctac
cagctgcgcggccgcgtcggccggtcgaaggtgcgcgccttcgcgctgctgacgctgccg
gtcaaccgcacgcttacgggcatggcggaacgccgcctcaaggtcctgcagtcgctcgat
acgctcggcgccggtttccagctcgcgagccacgatctcgatatccgcggcgccggcaac
ctgctgggcgaagagcagtccggccatatcaaggaggtcggcttcgagctctaccagcag
atgctcgaagaggcggtcgccgagatcaagggcgatgaagaagtcgccgatagcggctgg
tcgccgcaaatttccgtcggcacgccggtgatgattcctgatgattacgtgccggacctg
cacctgcggcttggcctctaccgccgcctcggcgagattaccgagcttggcgatatcgat
gctttcggtgccgaactgatcgaccgcttcggcccgttgccgctcgaggtgcagcatctc
ctgaagatcgtctacatcaagtcgctctgccgcgtggcgaatgtcgaaaagcttgatgcc
ggcccgaaaggtgtcgtcgtgcagttccgcaacaagcaattcccgaacccggcggccctt
gtcggctacatttccaagcagggcacgctggcgaagatcaggcccgaccagagcctgttc
ctgtcccgcgactacccgacgccggaaaggcgcctgacgggcgcggcccaggtgatgacg
cagcttgcagggttggcgaaacagggagcctga
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