Sinorhizobium sp. RAC02: BSY16_4677
Help
Entry
BSY16_4677 CDS
T04514
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
six
Sinorhizobium sp. RAC02
Pathway
six03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
six00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BSY16_4677 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
six03400
]
BSY16_4677 (ligD)
Enzymes [BR:
six01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BSY16_4677 (ligD)
DNA repair and recombination proteins [BR:
six03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BSY16_4677 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Glyco_hydro_65C
Motif
Other DBs
NCBI-ProteinID:
AOF94061
LinkDB
All DBs
Position
pBSY16_1:complement(690779..691837)
Genome browser
AA seq
352 aa
AA seq
DB search
MKVKRRSAVPLLDESGTALRSRPVRRRDPEQPSLPFDPMPERVEPCLALLRPTAPEGPEW
LFEIKWDGYRLAIHIEPKGVRIITRSGHDWTHRFPGIAEAAKKLGVGTAILDGEAVVLNK
EGHADFGALQRSLGGRGGKRASTEAVFFAFDLLYFNGHDLTNTELSVRRHLLSDFLDGAI
GAVQLSEEAHGDGVELLANACSMGLEGIVAKHRERPYRSGRTGDWVKIKCVQSESFMIVG
YEQSAAARGGIGSLLLAARRGDSWVSVGSVGTGFKAKDAGYLRKTLDKLKSKKPVVPVKG
KNYVFALPTLIAEMEFRGWTDDGNLRHASYKGLRERQDNAAVFDMDTLVGGK
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtgaagcgccgatcggccgtacccttgctcgatgaatccggcactgcgctgcgg
tcgcggccggtccgccgacgcgaccccgagcagccaagcctgcccttcgatccgatgccc
gaacgcgtcgagccgtgcctggcgcttctccggccgaccgcgccggaaggaccggaatgg
ctctttgagatcaaatgggacggctatcgcctcgccatccacatcgagccgaagggcgtg
cggatcatcacccgcagcggccatgactggacccatcgctttcccgggatcgcggaagct
gcgaagaagctcggcgtcgggaccgccatcctcgacggcgaggccgtggttctcaacaag
gagggccacgcggatttcggggcgctgcaacgctcgctgggcgggcgcggcggcaagcgc
gcctcgacggaggcggtcttcttcgcattcgatctcctctatttcaatggtcacgatctg
acgaacacggagctttcggttcgccggcatctcctttccgactttctcgacggcgcgatc
ggcgccgtgcagctctcggaagaagcccacggcgatggcgtcgagcttctggcaaatgcc
tgttcgatgggcctcgaaggcattgtcgccaagcaccgcgagcggccgtaccggtcggga
cgaacaggcgactgggtcaagatcaaatgcgtccagagtgagagcttcatgatcgtcggc
tacgagcagtccgctgctgcgcgtggcgggatcggtagccttctgcttgccgcccggcgc
ggcgatagctgggtgtcggtcggctctgtcggaaccgggttcaaggcgaaggatgccgga
tacctgcgcaagacattggacaagctgaagtcgaagaaaccggtcgtgccggtcaagggg
aagaactacgtcttcgcgctgccgacgctcatcgccgagatggagttccgcggctggacc
gacgacggaaatctgcgccacgcctcctataagggcctgcgcgaacgacaggacaatgcc
gccgtcttcgacatggataccttggtcggcggcaagtga
DBGET
integrated database retrieval system
