Shewanella japonica: SJ2017_1004
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Entry
SJ2017_1004 CDS
T04959
Name
(GenBank) penicillin-binding protein 2
KO
K05515
penicillin-binding protein 2 [EC:
3.4.16.4
]
Organism
sja
Shewanella japonica
Pathway
sja00550
Peptidoglycan biosynthesis
sja01100
Metabolic pathways
sja01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
sja00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
SJ2017_1004
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
SJ2017_1004
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
sja01011
]
SJ2017_1004
Enzymes [BR:
sja01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
SJ2017_1004
Peptidoglycan biosynthesis and degradation proteins [BR:
sja01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
SJ2017_1004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
Motif
Other DBs
NCBI-ProteinID:
ARD21335
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All DBs
Position
complement(1212216..1214072)
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AA seq
618 aa
AA seq
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MSPKKRIAMHDHAAEASLFKRRALFTFLCVFVLISILLSNLYQLQVVSFQDYETRSNDNR
IRVVPVAPSRGLIYDRHGQLLAENQPFYTLELIPEKAQGITESLDKLNEIIALTPDERES
ITERLRYHRRFKPLTIKSRLTEEQVATFSVNQHQFPGFRVEAGLKRHYPYEGLMTHVLGY
VGKINARDRASLESSGQWKNYAATNDIGKQGIEKFYESLLLGKPGHLEEEVNNRGRVIRT
LKVTPPTPGQDIYLTLDLKLQQKAMELLDGRRGSVVAIDPQDGGVLAMVSSPTYDPNLFV
HGISSKAYSALLNDKSRPLINRATQGQYSPASTIKPHVALLGLEEKTITEKTRIWDPGFW
QIPNVERKYRDWKRWGHGWVDVYSSIMDSCDTFFYDLAYKVGVDKIAQFMSQFGFGESTG
IDIYEEANGIMPSKDWKRMRYNQPWYIGDTISVGIGQGYWTTTPLQLTNAATILANHGQR
FTPHLLKSFKDETSKIDTPIDEQAPIVLDNDNNWEIINEAMRRTAHKSRFTDATYTAAMK
TGTAQVFSVAQDAKYDSETVAEHLRDNALIIAYAPYENPKIVLAVVLENAGWGGVNAGPV
ARALLDEYMLRDEWKVEE
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgccaaaaaagcgcattgccatgcacgaccacgctgccgaggcgtcgctattcaaa
cgtcgtgctttgtttaccttcctgtgcgtatttgtcctaatcagtatcctgctgtctaat
ctataccaattgcaggttgtctctttccaagattacgaaacacgctccaatgataaccgt
attcgtgtggtgcctgttgcacctagtcgtggtcttatttatgacagacacggacagtta
ctggctgaaaaccaacctttttatacgttagaactgatcccagaaaaagcccaaggaata
actgagtcgctggataaactcaatgagatcattgcgctcaccccagatgaacgagaaagc
atcactgaaagattgcgttaccatcgccgctttaagccacttacaattaaatcccgtctc
actgaagaacaagttgccacatttagtgttaaccaacaccaatttcctggctttagagta
gaggcaggccttaaacgtcattacccatatgaaggcttaatgacccatgtattgggttat
gttggaaaaattaatgctcgtgaccgtgcttcacttgaaagctcaggacaatggaaaaac
tatgccgcaaccaatgacattggcaaacaaggcatcgaaaaattctacgaaagcttatta
ttaggtaaacctggccacttagaagaagaagtgaataaccgtggtcgagtgatccgtacc
ttaaaagtcaccccgccgacaccgggtcaagatatctacttaacattagatttaaaactg
cagcaaaaagccatggagttactcgatggtcgccgtggctctgttgtcgctattgacccg
caagatggtggtgttctcgccatggtttctagcccaacttacgaccctaatttattcgta
catggcattagttctaaagcctatagcgcattacttaatgataaatctaggcctttgatt
aaccgtgcaacacaaggtcaatattcacctgcatcgacgattaaaccccatgtcgcactg
cttgggctagaagaaaaaaccattaccgagaaaacccgtatttgggatcctggtttttgg
caaattccaaatgttgagcgtaagtaccgagattggaaacgttggggtcacggttgggta
gatgtgtatagttcaatcatggattcctgcgacacgtttttctatgatctcgcctataaa
gtcggtgtcgataaaattgcccagtttatgtcccaatttggttttggcgaatccactggc
atcgatatttacgaagaggccaacggcatcatgccttcaaaagattggaagcgcatgcgc
tataaccaaccttggtatattggtgacactatttcggtgggaattggccaaggctactgg
acaaccacgccattacagttaacgaatgctgccaccatattagccaatcatggacagcgc
ttcacacctcatttgttaaaatcatttaaagatgaaacatcaaaaattgatacaccgata
gatgagcaagccccaattgtgctcgataatgacaacaactgggaaatcatcaatgaagca
atgcgccgcacagctcacaaatctcgctttaccgatgctacttataccgcagcaatgaaa
accggtacggcgcaagtattcagtgtcgcacaagatgccaaatacgattctgaaaccgtt
gcagagcatttacgagataacgcattaatcattgcctatgccccttatgaaaacccgaaa
atagtcttagcagttgtacttgaaaatgctggctggggtggtgttaatgcagggccagtt
gcccgtgctctattggatgaatatatgttacgtgacgaatggaaggtagaagaatga
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