Streptomyces janthinus: RI060_25195
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Entry
RI060_25195 CDS
T09385
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sjn
Streptomyces janthinus
Pathway
sjn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sjn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RI060_25195 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sjn03400
]
RI060_25195 (mfd)
Enzymes [BR:
sjn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RI060_25195 (mfd)
DNA repair and recombination proteins [BR:
sjn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RI060_25195 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
UB2H
AAA_22
RecG_dom3_C
DUF6099
Motif
Other DBs
NCBI-ProteinID:
WND20430
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All DBs
Position
5477346..5480879
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AA seq
1177 aa
AA seq
DB search
MSLHGLLDAVVRDAALAEAISAAADGNRMHVDLVGPPAARPFAVAALARDTGRPVLAVTA
TGREAEDLAAALRSLLPPAGVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRPDDP
ETGPVSVVVAPVRSVLQPQVKGLGDLEPVSLKPGQSVDLEEIVDALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRIEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTEDVRARARALAEQHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPRGAMAV
VCDPERVRTRASDLVATSQEFLQASWAATAGGGEAPIDVGAASLWSIADVRDRARELDMM
WWSVSPFAADEELDADTLKLGMHAPEAYRGDTAKALADTKGWLADGWRTVFVTEGHGPAA
RTVEVLGGEGIAARLDADLAEISPSLVHVACGSIEHGFVDTALGLAVLTETDLTGQRAAG
RDGARMPARRRKTIDPLTLEPGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKR
GQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHAFGTDTPWQRELEDAFPYAETPDQLTTIAEVKDDMEKTVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYAQFPVSVKALSRFQTDTEAKA
VLEGLREGSVDIVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEERQIGAAIRRELLREGQVFY
IHNRVESIDRAAARLREIVPEARIATAHGQMSESALEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRRQLETGE
IEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANTEEDVKAVREELVDRYGKL
PEPVENLLLVAGLRMLARACGVGEIVLQGTNIRFAPVELRESQELRLKRLYPGTVIKPSV
HQVLVPRPKTAKVGGKPLVGRELLGWVGEFLTSVLGS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgcttgacgccgtagtcagagacgccgccctcgcggaagcgatc
agcgcggccgcagacggcaaccgcatgcacgtcgacctggtcggcccccctgcggcccgc
cccttcgcggtcgccgccctggcccgggacacgggccgcccggtgctggcggtgacggcg
acgggccgcgaggcggaggacctggccgcggccctgcgctccctcctcccgccggcggga
gtggtggagtacccctcctgggagaccctcccgcacgagcggctcagcccccgcagcgac
accgtcggccgccgcctggccgtgctgcgccgcctggcccacccccgccccgacgacccc
gagaccggcccggtctccgtcgtcgtggcgcccgtcaggtccgtgctccagccgcaggtc
aagggcctgggcgacctggagccggtctccctgaagccggggcagagcgtcgacctcgag
gagatcgtcgacgccctcgcggccgccgcgtacgcgcgcgtggagctggtcgagaagcgc
ggcgagttcgccgtgcgcggcggcatcctcgatgtgttcccgcccaccgaggaacacccc
ctgcgcatcgagttctggggcgacgacgtagaggagatccgctacttcaaggtcgccgac
cagcgctccctcgaagtcgccgagcacggcctgtgggcgccgccgtgccgcgaactgctg
ctcaccgaggatgtccgcgcgcgggcgcgtgccctggccgaacagcatcccgagctcggt
gaactgctcggcaagatcgccgaggggatcgcggtcgagggcatggagtccctcgctccg
gtcctggtcgacgacatggagctgctgctcgacgtgctgccccggggcgccatggccgtc
gtgtgcgatccggagcgggtccgcacgcgcgcatcggacctggtggccacctcgcaggag
ttcctgcaggcctcctgggcggccaccgccggcggcggcgaggcgcccatcgacgtcggc
gcggcctccctgtggtccatcgcggacgtccgggaccgggcccgcgagctggacatgatg
tggtggtcggtgtcgccgttcgccgcggacgaagagctggacgcggacaccctgaagctg
gggatgcacgccccggaggcctatcgcggggacaccgccaaggccctcgccgacaccaag
ggctggctcgccgacggctggcgcacggtgttcgtcaccgaggggcacggaccggcggcc
cgtacggtcgaggtgctgggcggcgagggcatcgcggcccgcctcgacgccgacctcgcc
gagatctccccgtccctcgtgcacgtggcgtgcggctcgatcgagcacggcttcgtcgac
acggccctcggactcgcggtgctgaccgagaccgacctgaccggccagcgggccgcgggc
cgcgacggcgcccggatgccggcccgccgccgcaagaccatcgacccgctcaccctggag
ccgggcgactacatcgtccacgagcagcacggcgtgggccgctacatcgagatggtgcag
cgcaccgtgcagggcgcgacccgcgagtacctggtcgtcgagtacgcgcccgccaagcgc
ggccagcccggcgaccgcctctacatccccaccgaccagctggagcagatcaccaagtac
gtcggcggcgaggcccccaccctgcaccgcctgggcggcgccgactggacgaagacgaag
gcccgcgcgaagaaggccgtcaaggagatcgccgccgacctcatcaagctgtacagcgcg
cgcatggcggcccccgggcacgccttcgggacggacaccccctggcagcgcgagctggag
gacgccttcccctacgcggagacgcccgaccagctcaccaccatcgccgaggtcaaggac
gacatggagaagacggtcccgatggaccggctgatctgcggcgacgtcggctacggcaag
accgagatcgcggtccgggccgccttcaaggccgtccaggacggcaagcaggtggccgtc
ctggtgcccacgaccctgctggtgcagcagcacttcgggacgttcagcgagcggtacgcg
cagttcccggtcagcgtgaaggcactctcgcgcttccagaccgacaccgaggccaaggcg
gtcctggagggcctgcgcgagggctcggtggacatcgtcatcggcacgcaccggctgttc
tcgtcggagacgaagttcaaggacctgggcctggtcatcgtcgacgaggagcagcgcttc
ggcgtcgagcacaaggagcagctgaagaagctccgggccaacgtcgacgtcctgacgatg
tccgcgaccccgatccccaggaccctggagatggcggtcacgggcatccgggagatgtcg
acgatcaccaccccgcccgaggagcggcacccggtgctgaccttcgtgggcccttacgag
gagaggcagatcggcgccgccatccgccgtgaactgctgcgcgagggccaggtcttctac
atccacaaccgggtcgagtcgatcgaccgggccgcggcccggctgcgcgagatcgtcccc
gaggcgcgcatcgccaccgcccacggccagatgtcggagtcggcgctggagcaggtcgtc
gtcgacttctgggagaagaagttcgacgtgctggtgtccacgacgatcgtggagtccggc
atcgacatctccaacgcgaacacgctcatcgtggagcgcggcgacaacttcgggctgtcg
cagctgcaccagctgcgcggccgggtgggccgaggccgcgagcgcgggtacgcgtacttc
ctgtacccgccggagaagccgctgaccgagaccgcgcacgagcggctcgcgaccatcgcg
cagcacacggagatgggcgccggcatgtacgtggcgatgaaggacctggagatccgcggc
gcgggcaacctcctcggcggcgagcagtccggccacatcgcgggcgtcggcttcgacctg
tacgtacggatggtgggcgaggccgtcgccgactaccggcgacagctggagaccggcgag
atcgaggaggagccgccgctcgaggtcaagatcgagctgcccgtcgacgcgcatgtcccg
cacgactacgcgccgggcgagcggctccgcctccaggcctaccgcgccatcgcctccgcc
aacacggaggaggacgtcaaggccgtccgcgaggaactcgtcgaccgctacggcaagctg
cccgaaccggtggagaacctgctgctcgtcgccggtctgcggatgctcgcgcgcgcgtgc
ggcgtcggcgagatcgtgctccagggcaccaacatccgcttcgcgccggtggagttgcgc
gaatcgcaggaactgcggctcaagcggctgtaccccgggacggtcatcaagccgtcggtg
caccaggtgctggtgccgcgcccgaagaccgcgaaggtcggcgggaagccgctggtcggg
cgggagttgctggggtgggtcggggagttcctgacgtcggtgctggggtcctga
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