Scomber japonicus (chub mackerel): 128363220
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Entry
128363220 CDS
T09718
Symbol
thoc3
Name
(RefSeq) THO complex subunit 3
KO
K12880
THO complex subunit 3
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03013
Nucleocytoplasmic transport
sjo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128363220 (thoc3)
09122 Translation
03013 Nucleocytoplasmic transport
128363220 (thoc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128363220 (thoc3)
03041 Spliceosome [BR:
sjo03041
]
128363220 (thoc3)
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
128363220 (thoc3)
Spliceosome [BR:
sjo03041
]
Complex C
Other components
EJC/TREX
128363220 (thoc3)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
128363220 (thoc3)
BRITE hierarchy
Motif
Pfam:
WD40
ANAPC4_WD40
eIF2A
RMC1_N
NBCH_WD40
PD40
Coatomer_WDAD
Peptidase_S9_N
Nup160
Cytochrom_D1
DPPIV_N
YNCE
IKI3
PROPPIN
Motif
Other DBs
NCBI-GeneID:
128363220
NCBI-ProteinID:
XP_053180141
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All DBs
Position
8:complement(30780834..30785292)
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AA seq
322 aa
AA seq
DB search
MASQYYQEMQESFRNNNKSREFPAHTAKVHSVAWSCDGRRLASGSFDKTASVFILEKDRL
VKENNYRGHGDSVDQLCWHPTNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICW
SPDGQTIAVGNKDDVVTFIDAKTHRSKAEEQFKFEVNEISWNNDNDMFFLTNGNGCINIL
SYPELKPIQSINAHPSNCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPV
RTLSFSHDGKMLASASEDHFIDIAEVETGEKLWEVQCDSPTFTVAWHPKRPLLAYACDDK
EGKYDNNREAGTVKLFGLPNDS
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgcagtactaccaagagatgcaggagagcttcagaaataacaacaaaagtcgt
gaattcccggctcacacagctaaagttcactcggtggcgtggagctgcgatggcaggaga
ctcgcctccggatctttcgataaaacagccagtgttttcatcctggagaaggaccgattg
gtgaaggaaaacaactacagaggtcatggcgacagcgtggatcagctctgctggcatccg
accaaccccgatctgttcgtcactgcgtccggtgacaagaccattcgcatctgggacgtc
cgcaccaccaaatgcatcgccactgtcaatacgaaaggtgagaacattaacatctgctgg
agccccgacggtcagaccatcgccgtcggaaacaaagacgacgtggtgactttcatcgat
gccaagactcatcgctccaaagcagaagagcagttcaagttcgaggtgaacgagatctcc
tggaacaacgacaacgacatgttcttcctcacaaacggaaacggctgcatcaatattctc
agttatccagagctgaaacccatccagtccatcaacgctcacccatctaactgcatctgc
atcaagttcgaccctatgggaaaatactttgccacgggaagcgccgatgctctggtcagc
ctgtgggatgtggacgagctggtttgtgtgcgctgtttctccaggttggactggccggtg
agaacactcagcttcagccatgatgggaagatgttggcgtcggcctccgaggatcacttc
atagacattgcagaggtggaaacaggagagaagctgtgggaggttcagtgtgattctcca
accttcaccgtcgcctggcatcccaagaggccgctgctggcctacgcctgcgacgacaag
gagggcaaatacgacaacaaccgagaggcaggcaccgtgaaactattcggccttcccaac
gactcctga
DBGET
integrated database retrieval system