KEGG   Scomber japonicus (chub mackerel): 128363220
Entry
128363220         CDS       T09718                                 
Symbol
thoc3
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
sjo  Scomber japonicus (chub mackerel)
Pathway
sjo03013  Nucleocytoplasmic transport
sjo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sjo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    128363220 (thoc3)
  09122 Translation
   03013 Nucleocytoplasmic transport
    128363220 (thoc3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sjo03019]
    128363220 (thoc3)
   03041 Spliceosome [BR:sjo03041]
    128363220 (thoc3)
Messenger RNA biogenesis [BR:sjo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     128363220 (thoc3)
Spliceosome [BR:sjo03041]
 Complex C
  Other components
   EJC/TREX
    128363220 (thoc3)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    128363220 (thoc3)
Motif
Pfam: WD40 ANAPC4_WD40 eIF2A RMC1_N NBCH_WD40 PD40 Coatomer_WDAD Peptidase_S9_N Nup160 Cytochrom_D1 DPPIV_N YNCE IKI3 PROPPIN
Other DBs
NCBI-GeneID: 128363220
NCBI-ProteinID: XP_053180141
LinkDB
Position
8:complement(30780834..30785292)
AA seq 322 aa
MASQYYQEMQESFRNNNKSREFPAHTAKVHSVAWSCDGRRLASGSFDKTASVFILEKDRL
VKENNYRGHGDSVDQLCWHPTNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICW
SPDGQTIAVGNKDDVVTFIDAKTHRSKAEEQFKFEVNEISWNNDNDMFFLTNGNGCINIL
SYPELKPIQSINAHPSNCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPV
RTLSFSHDGKMLASASEDHFIDIAEVETGEKLWEVQCDSPTFTVAWHPKRPLLAYACDDK
EGKYDNNREAGTVKLFGLPNDS
NT seq 969 nt   +upstreamnt  +downstreamnt
atggcgtcgcagtactaccaagagatgcaggagagcttcagaaataacaacaaaagtcgt
gaattcccggctcacacagctaaagttcactcggtggcgtggagctgcgatggcaggaga
ctcgcctccggatctttcgataaaacagccagtgttttcatcctggagaaggaccgattg
gtgaaggaaaacaactacagaggtcatggcgacagcgtggatcagctctgctggcatccg
accaaccccgatctgttcgtcactgcgtccggtgacaagaccattcgcatctgggacgtc
cgcaccaccaaatgcatcgccactgtcaatacgaaaggtgagaacattaacatctgctgg
agccccgacggtcagaccatcgccgtcggaaacaaagacgacgtggtgactttcatcgat
gccaagactcatcgctccaaagcagaagagcagttcaagttcgaggtgaacgagatctcc
tggaacaacgacaacgacatgttcttcctcacaaacggaaacggctgcatcaatattctc
agttatccagagctgaaacccatccagtccatcaacgctcacccatctaactgcatctgc
atcaagttcgaccctatgggaaaatactttgccacgggaagcgccgatgctctggtcagc
ctgtgggatgtggacgagctggtttgtgtgcgctgtttctccaggttggactggccggtg
agaacactcagcttcagccatgatgggaagatgttggcgtcggcctccgaggatcacttc
atagacattgcagaggtggaaacaggagagaagctgtgggaggttcagtgtgattctcca
accttcaccgtcgcctggcatcccaagaggccgctgctggcctacgcctgcgacgacaag
gagggcaaatacgacaacaaccgagaggcaggcaccgtgaaactattcggccttcccaac
gactcctga

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