Scomber japonicus (chub mackerel): 128363885
Help
Entry
128363885 CDS
T09718
Symbol
sox6
Name
(RefSeq) transcription factor SOX-6 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sjo03000
]
128363885 (sox6)
Transcription factors [BR:
sjo03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
128363885 (sox6)
BRITE hierarchy
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
128363885
NCBI-ProteinID:
XP_053180533
LinkDB
All DBs
Position
1:complement(23599436..23738519)
Genome browser
AA seq
780 aa
AA seq
DB search
MEGFLRSSFLLSRVMSSKQATSPFASVVDGDDAISQEHLSWEKEESAEAHCTPQLPLHSL
LHGKAHPDEMQPLSSVPPESDWDSLVSAQQRMESDSNKVCSLYSFRNNSTSPHKPEEGAR
DRSDLLSGSAFGTPERRKGSLADVVDTLKQKKLEEMTKTEQDESCMEKLLSKDWKEKMER
LNTSELLAEVKGTPESLAEKERQLSTMITQLISLREQLLAAHDEQKKLAASQMEKQRQQM
ELARQQQEQIARQQQQLLQQQHKINLLQQQIQQVQGHMPPLMIPIFPHDQRTLAAAAAAQ
QGFLFPPGMSYKPGDNYPVQFIPSSMAAAAASGLSPLQLQQLYAAQLASMQVSPGAKMPP
LPQSLNASGPISPSSLKNDKSSSSPITQVKEEGTQPLNLSARPKTTDLVKSPTSPTQNLF
PGCKSSPNNLVSKGGISSPLGGGLGRGSSLDILSSLNSTALFGDQDTVLKAIQEARKMRE
QIQREQLQHHQQGMEAKLSALSSVGLNNCRIDKERAHFESIGHHLGKLGEEGKIGHRVID
LTRPEDLDGGAGSTEARVFRESRGRNNNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNS
NISKILGSRWKSMSNQDKQPYYEEQARLSKLHLEKYPNYKYKPRPKRTCIIDGKKLRIGE
YKQMMRSRRQEMRQFFTVGQPPQIPITTSASMVYPGAITMATTTPSPQMTSECSSASASP
EPSIPVIQSTYNMKLEPNTIANNSEPVNGEDEMDMYEDFEDEPKSDYSSENDTQEQVSAN
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atggagggctttcttcgtagcagctttttactgagcagagtcatgtcttccaagcaagcc
acgtctccttttgcctctgtggttgatggagatgatgccataagtcaggagcacttatct
tgggagaaagaggagagtgctgaggctcattgcacaccgcagctgccactgcacagcctg
ctccacggaaaagcccaccccgatgaaatgcagccgctaagcagtgtaccgccagagagt
gactgggacagcctggtgtcagcccagcagcgtatggaatctgacagcaataaagtatgt
tccctctactccttccggaacaattccacttccccgcacaagcctgaggagggggcccgg
gatcgaagtgacctgctgagcggatcagcgtttggaactcctgagcgccgcaaaggaagc
ctggcagacgtagtggacacgctgaagcagaagaagctggaggagatgacaaagacagag
caagacgagtcctgcatggagaaactactttcaaaagactggaaagagaagatggagagg
ctcaacaccagcgaactcctggcagaagtaaaaggtactccagagagcctggcagaaaag
gaacgccagctctccacaatgatcacccagctgatcagcctgcgagagcagcttctggct
gcccacgatgaacagaagaagctcgctgcctcacagatggagaaacagaggcagcaaatg
gagttagcgcgtcagcagcaggagcagattgcaagacaacagcagcagcttctacagcag
cagcacaaaatcaacctcctccagcagcagatccagcaggtccagggtcacatgcctccg
ctcatgatccccatttttccacacgaccaacgcactctggcagcagcagccgccgcccag
caaggttttctcttccctccgggaatgtcttataagccaggtgataactacccagtgcag
ttcattccatcctcaatggcagctgcagcagcgtcaggactcagccccctccagcttcag
caactgtatgccgcccagcttgccagcatgcaggtctctcctggagccaagatgcctcca
ctcccccagtccctcaatgcgagtgggcccatttctccctcctctctgaagaatgacaag
agttcctccagccccatcactcaagtcaaggaggagggaacacagcctctcaacctttct
gcccggccaaagacgacagatctggtcaaatccccgacatcgccgacacaaaacctgttc
cccggctgtaaaagcagcccaaacaatcttgtcagcaagggtggtatctccagcccactc
ggaggcggcttgggccgaggctcttctttggacatcctgtccagcctaaactctaccgca
ttgttcggggaccaggacacagtgctgaaggccatccaggaggctcgtaaaatgagggag
cagatccagagggaacagctgcaacaccaccagcagggcatggaggcaaaactatccgcc
ctcagttcagtgggcctcaacaactgcagaattgacaaagaaagggcgcattttgagagc
attggacaccacctcggcaagctgggtgaggaaggaaaaatcggccacagagttattgac
ctcaccaggccagaggatcttgatggaggtgctggatctactgaggcacgtgtcttcagg
gaatcccgaggaaggaacaacaacgagccccacattaaaaggccaatgaacgcattcatg
gtgtgggccaaggatgagcggcgcaagattctccaggccttccccgacatgcacaattcc
aacataagcaagattttgggttctcggtggaagtccatgtccaaccaggacaagcagcca
tactacgaggagcaggcccgtctgagcaagcttcacctagagaagtacccaaactacaag
tacaagccgcggcccaagaggacctgcattattgacggaaaaaaacttcgcataggagag
tacaagcagatgatgcgctcacggcgacaagagatgaggcagttcttcactgtggggcag
ccgccacagattcccatcaccaccagcgccagcatggtctatcctggggccatcaccatg
gcgactactacaccctcacctcagatgacatcagagtgctccagtgcctcggcgagtcct
gagccatccattcctgtcattcagagcacctataacatgaagctggagcccaacaccata
gcaaacaatagtgagccagtcaacggcgaggatgagatggacatgtacgaggattttgag
gatgagccgaaatcagactatagtagtgaaaatgacacacaagagcaagtcagcgccaac
tga
DBGET
integrated database retrieval system
