Scomber japonicus (chub mackerel): 128364084
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Entry
128364084 CDS
T09718
Symbol
gtf2h2
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03022
Basal transcription factors
sjo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
128364084 (gtf2h2)
09124 Replication and repair
03420 Nucleotide excision repair
128364084 (gtf2h2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sjo03021
]
128364084 (gtf2h2)
03400 DNA repair and recombination proteins [BR:
sjo03400
]
128364084 (gtf2h2)
Transcription machinery [BR:
sjo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
128364084 (gtf2h2)
DNA repair and recombination proteins [BR:
sjo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
128364084 (gtf2h2)
BRITE hierarchy
Motif
Pfam:
Ssl1
VWA_2
C1_4
VWA
IBR
Motif
Other DBs
NCBI-GeneID:
128364084
NCBI-ProteinID:
XP_053180547
LinkDB
All DBs
Position
9:39390396..39408317
Genome browser
AA seq
393 aa
AA seq
DB search
MDEEPERAKRWEGGYERTWEVLKEDESGSLKATVEEILFQSKRKRVVESHGQVRLGMMRH
LYVVIDCSRSMEDQDLKPNRLTSTLKLMEAFVEEYFDQNPISQVGIITTKNKRAEKLTDL
AGNPKKHTAALKKAVDTVCVGEPSLYNSLNLAIQTLKHMPGHTSREILIVLSSLTTCDPA
NIYELIKTLKSLKVRVSVIGLSAEVRVCTVLTRETGGSYHVILDESHFKELLMLHVKPPP
ASSSSECSLIRMGFPQHTIASLTDQDSKPSFSMSHLDSSSGAPGLSLGGYFCPQCHAKYT
ELPVECKVCGLTLVSAPHLARSFHHLFPLQAFTESPLEELQGDRFCQGCEGELKDKSVFT
CPSCHKVFCVECDLFIHDSLHCCPCCIHSQSAP
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagaaccagagagagccaagcgctgggaaggaggctatgagaggacatgggaa
gtactgaaggaggatgagtccggttcactcaaagccacagtggaggaaatcctgttccag
tccaaaaggaaaagggttgtagagagccatggacaagtgaggctgggcatgatgcgtcat
ctctatgtggtgattgactgttcaagaagtatggaagaccaagacctgaagccaaaccgt
ctcacctctactctgaagctgatggaagcttttgttgaagagtattttgaccaaaacccc
atcagtcaggtgggcatcatcactacaaagaataaaagagctgagaagctgactgatctg
gcagggaatccaaagaagcacactgctgctctgaagaaagcagtggacacagtgtgtgta
ggagagccgtccctctacaactctctcaacctcgccatacagactctcaaacacatgcct
ggacacacgagccgggagatcctgatcgtcctcagcagcctcaccacatgtgacccagcc
aacatctacgagctgatcaagaccctgaagtctctgaaggtgcgggtgtctgtgatcggc
ctgtcagcggaggtgcgggtgtgcacggtgttgaccagggagacgggtggctcataccac
gtcatcctggatgagagccacttcaaagagctgctgatgctgcacgtcaaacctccacct
gccagctcctcgtccgaatgctctttaatacgcatgggttttcctcagcacaccatcgcc
tctctgactgaccaggactccaagccttcattcagcatgtctcatttagacagcagcagt
ggtgctcctggtctgtctttgggaggatacttctgtccacagtgtcacgccaagtacaca
gagcttcctgtggagtgtaaagtctgtggtttaactctggtgtcagcccctcatcttgcc
agatccttccatcacctcttccccctccaagcctttacagagagtcctctggaagagctc
caaggagacaggttctgtcaaggctgtgaaggagagctgaaggataaaagtgtattcacc
tgtccgtcgtgtcacaaagtcttctgtgtggagtgtgatcttttcatccatgactcgttg
cactgctgcccctgctgtattcacagtcagagcgccccctga
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