Scomber japonicus (chub mackerel): 128365904
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Entry
128365904 CDS
T09718
Symbol
ddx61
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128365904 (ddx61)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128365904 (ddx61)
03036 Chromosome and associated proteins [BR:
sjo03036
]
128365904 (ddx61)
Enzymes [BR:
sjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128365904 (ddx61)
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
128365904 (ddx61)
mRNA degradation factors
5'-3' decay
Decapping complex
128365904 (ddx61)
Chromosome and associated proteins [BR:
sjo03036
]
Eukaryotic type
Gene silencing
piRNA pathway
128365904 (ddx61)
BRITE hierarchy
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
128365904
NCBI-ProteinID:
XP_053182499
LinkDB
All DBs
Position
10:complement(7045639..7054221)
Genome browser
AA seq
487 aa
AA seq
DB search
MATARTANPAPMIGLNKPANGQLRGQTKPPGQQLGPLSTAQLPNAPQNKSSIPQSSGGIK
FGDDWKKCLELPPKDNRMRTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESI
PIALSGRDILARAKNGTGKSGAYLIPLLERIDTKKDHIQAIVMVPTRELALQMSQISIQL
SKHLGGVKVMVTTGGTNLRDDIMRLDEIVHVVIATPGRILDLLKKGVAKMDKTQMMVMDE
ADKLLSQDFVVLIEDIISFLPKERQILLYSATFPISVQKFMSKHLQKPYEINLMEELTLK
GITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAK
MMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR
FGHLGLAINLITSEDRYNLKNIEDQLITDIKPIPSSIDKSLYVAEFHSVDPDDDDCSGSK
NKELGAA
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atggctacagcaagaactgcaaacccagcaccaatgattggactgaataaaccagcaaat
gggcagctcagaggacagaccaagccacctggccaacagttgggacccctttcaactgcc
caactgcccaatgcccctcagaataagagcagcattcctcagagcagtgggggcatcaag
tttggtgatgactggaaaaagtgcctggagcttcctccaaaagacaacagaatgagaacc
tcggatgtcacatcaacgaagggaaatgaatttgaagactactgtctaaagcgagaactt
ctaatgggaatctttgaaatgggatgggagaaaccctcccctattcaggaggaaagcatc
cccatcgctctctcaggcagagatattttggctcgggcaaagaacggcacaggaaaaagt
ggagcctacctcatccctctcttggagaggatagacacgaagaaggatcacattcaggcc
atagtaatggttcccacaagagaattggccctgcagatgagccagatcagcattcagctc
agcaagcaccttggaggggtcaaagtcatggttaccactgggggcaccaacttgagggat
gacatcatgcgtcttgatgagatagtgcatgtagtgattgctacacctggcaggatactg
gacctgctgaagaagggtgtggcaaaaatggataagacacaaatgatggtgatggatgag
gcggataagcttctgtctcaggattttgtggtgctgattgaagatattatcagcttctta
ccaaaggaacgtcagattctgctttactctgccacttttcccatcagtgtgcaaaaattc
atgagcaagcaccttcagaagccttatgaaatcaacctgatggaggaactgaccttgaaa
ggcatcactcagtactacgcgtatgtgactgaaagacagaaggtccactgtctcaacaca
ctcttctccaggcttcagatcaatcagtcaatcatcttctgtaactcaacccagagggtt
gaacttctggctaagaaaataacccaactgggctattcgtgcttctacattcatgcaaag
atgatgcaggagtacaggaaccgtgtgttccatgacttcaggaatggattgtgcaggaac
ctggtctgcacagacctgttcactcggggaatcgacatccaggcagtaaatgtggtcatc
aactttgactttcccaaaaatgcagagacctaccttcaccgcattggcagatcagggcgt
tttggtcatctgggtctggccatcaatctgataacttcagaggaccgctacaacctgaag
aacattgaggaccagctgattactgacatcaagcccattcccagcagcattgacaagagc
ctgtatgtggcagagtttcactctgttgacccagatgatgatgactgcagtggatccaaa
aacaaagaactgggagcagcctga
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