Scomber japonicus (chub mackerel): 128368646
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Entry
128368646 CDS
T09718
Name
(RefSeq) tripartite motif-containing protein 16-like
KO
K12006
tripartite motif-containing protein 16
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sjo04121
]
128368646
Ubiquitin system [BR:
sjo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
128368646
BRITE hierarchy
Motif
Pfam:
zf-C3HC4_4
PRY
SPRY
zf-RING_UBOX
zf-C3HC4
zf-B_box
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
U-box
Prok-RING_4
zf-RING_5
zf-RING_10
ApoLp-III
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
128368646
NCBI-ProteinID:
XP_053185477
LinkDB
All DBs
Position
12:complement(32247564..32249339)
Genome browser
AA seq
557 aa
AA seq
DB search
MAQQGAQLDGAKFCCSICLDLLKDPVTIPCGHSYCMSCINNFWDEEEKAVYSCPQCRQTV
TPRPVLMKSTMLAVLVEQLKKTGLKAAPADLCYTGPEDVACDVCTGRKLKAHKSCMQCLA
SYCNKHLQPHYDAAPLKKHKLVEPSKKLQENICSRHDEVMKMFCRTDQKSICYLCPVDEH
KGHDTVSAAVERTERQRELEVSRLNIQQRIQDREKDVKLLQQEVDAVSHSADEAVEASEK
IFTELIRLIQKRSSDVRQQIRSQQETEVSRVKELQEKLQQEITELKRKDAELKKLSHTED
HNQFLHNYPSVSQLSEPTDSSSIDIRPLRYFEDVTAAVSELRDKLQDILKEEWTNISLTV
TEVDVLLSDSKSEPKTRAGFLKYSREITLDPNTAYMKLLLSEENRKAELTTQQSYSSHPD
RFTVCEQVLSRDSLTRRCYWEVEWRGGGVRVAVAYKNINRAGRSNECGFGRNDKSWALRC
ANNSYVFWFNNISTPVSGAQSSRVGVYLDHRAGILSFYSVSETMTLLHRVQTTFTQPLYA
GLWLLDSGVTAEFCKLK
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atggcacaacaaggagctcagctggacggagctaaattctgctgttcgatctgtttggat
ctactgaaggatccagtgactattccctgtggacacagctactgcatgagctgtattaac
aacttctgggatgaagaagaaaaggcagtctacagctgtcctcagtgcagacagacagtc
acaccgaggcctgtcctgatgaaaagcaccatgttagcagttttagtggagcagctgaag
aagactggactcaaagctgctcctgctgatctctgctatactggacctgaagatgtggct
tgtgatgtctgcactgggaggaagctgaaagcccacaagtcctgtatgcagtgtctggct
tcttattgtaataaacacctccagcctcattatgatgcagctccattaaagaaacacaag
ctggtcgagccctccaagaagctccaggagaacatctgctctcgtcatgatgaggtgatg
aagatgttctgtcgtactgatcagaagagtatctgttatctctgccctgttgatgaacat
aaaggccacgacacagtctcagctgccgtagaaaggactgagaggcagagagagctcgag
gtgagtcgactaaacatccagcagagaatccaggacagagagaaagatgtgaagctgctt
caacaggaggtggatgccgtcagtcattctgctgatgaagccgtggaggccagtgagaag
atcttcactgagctgatccgtctcatccagaaaagaagctctgatgtgaggcagcagatc
agatcccagcaggaaactgaagtgagtcgagtcaaagagcttcaggagaagctgcagcag
gagatcactgagctgaagaggaaagacgctgaactgaagaagctctcacacacagaggat
cacaaccagtttctacacaactacccctcagtgtcacaactcagtgaacctacagactca
tccagcatcgatatccgtcctctgagatactttgaggatgtgacagcagctgtgtcagag
ctcagagataaactacaggacatcctgaaggaggaatggacaaacatctcactgacagtg
actgaagtggacgttttactgtcagattcaaaatcagagcccaagaccagagctggattc
ttaaaatattcacgtgaaatcactctggatccaaacactgcatacatgaagctgctatta
tctgaggagaacagaaaagcagaactaacaactcaacagtcttattctagtcacccagac
agattcactgtatgtgaacaggtcctgagtagagatagtctgactagacgttgttactgg
gaggtggagtggagaggaggaggagttcgtgtagcagtcgcatacaagaacatcaacaga
gcaggacgctcaaatgaatgtggatttgggcgtaatgacaaatcttgggctttaagatgt
gccaataacagttatgtattctggttcaacaacatctcaactcccgtctcaggtgctcag
tcctccagagtcggagtgtacctggatcacagagcaggtattctgtccttctacagcgtc
tctgaaaccatgactctcctccacagagtccagaccacattcactcagcctctctatgct
ggactttggctattagattctggggtcacagccgagttctgtaaactcaaatag
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