Scomber japonicus (chub mackerel): 128368674
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Entry
128368674 CDS
T09718
Name
(RefSeq) tripartite motif-containing protein 16-like
KO
K12006
tripartite motif-containing protein 16
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sjo04121
]
128368674
Ubiquitin system [BR:
sjo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
128368674
BRITE hierarchy
Motif
Pfam:
zf-C3HC4_4
PRY
SPRY
zf-B_box
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
U-box
zf-RING_5
zf-ANAPC11
Prok-RING_4
FapA
PaRep2a
UvrD-helicase
Fib_alpha
MRP-S31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
128368674
NCBI-ProteinID:
XP_053185509
LinkDB
All DBs
Position
12:33004150..33005826
Genome browser
AA seq
542 aa
AA seq
DB search
MAQQGAQLDGAKFCCSMCLDLLKDPVTIPCGHSYCMSCINNFWDEEDKKEIYSCPQCRQT
FTPRPVLVKSTMLADLLEELKKTGLQAAAADLCYAGPEDVACDVCTGRKLKAFKSCLVCL
VSYCENHLQPHYESTKFKKHKLVDPSETLQENICSRHDEVMKMFCRTDQQIICYLCSVDE
HKGHDTVSAKAERTERQRELEVSRLNIQRRIQDREKDVKLLQQEVEAISRSADKAVEDSE
KIFTELIRHLQKRSSDVKQQIRSQQETEVSGVKELQEKLQQEITELKRKDAELKKLSHTE
DHNQFLHNYPSVSQLSEATDSSSINIRPLRYFEDVTAAVSELRDKLQDILKEEWTNISLT
TRAGFLRYSHEITLDPNTAFTLLLLSDWNRKATYTSQQQSNSSHPDRFTGWQQVLSRESL
TGRCYWEVEWSGTGLCVAVAYKNISRAGSKECRFGFNDKSWALHYYNNKYELWFNSISTP
VSGPGSSRVGVYLDHRAGILSFYSVSETMTLLHRVQTTFTQPLYAGVRLNAYGNTAELCK
VK
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagcaaggagctcagctggacggagctaaattctgctgttccatgtgtttggat
ctactgaaggatccggtgactattccctgtggacacagctactgcatgagctgtattaac
aacttctgggatgaagaggataaaaaggaaatctacagctgtcctcagtgcagacagacc
ttcacaccgaggcctgtcctggtaaaaagcaccatgttagcagatttattggaggagctg
aagaagactggactccaagctgctgctgctgatctctgctatgctggaccagaggatgtg
gcctgtgatgtctgcactgggaggaagctgaaagccttcaagtcctgtctggtgtgtctc
gtctcttactgtgagaatcacctccagcctcactatgaatcaacaaaatttaagaaacac
aagctggtcgacccctcggagacgctccaggagaacatctgctctcgtcatgatgaggtg
atgaagatgttctgtcgtactgatcagcagattatctgttatctctgctctgtggatgaa
cataaaggtcatgacacagtctcagctaaagccgaaaggactgagaggcagagagagctc
gaggtgagtcgactaaacatccagcggagaatccaggacagagagaaagatgtgaagctg
cttcaacaggaggtggaggccatcagtcgctctgctgataaggcagtggaggacagtgag
aagatcttcactgagctgatccgtcacctccagaaaagaagctctgatgtgaaacagcag
atcagatcccagcaggaaactgaagtgagtggagtcaaagagcttcaggagaagctgcag
caggagatcactgagctgaagaggaaagacgctgaactgaagaagctctcacacacagag
gatcacaaccagtttctacacaactacccctcagtgtctcaactcagtgaagcaacagac
tcatccagcatcaatatccgtcctctgagatactttgaggatgtgacagcagctgtgtca
gagctcagagataaactacaggacatcctgaaggaggaatggacaaacatctcactgaca
accagagctggattcttaagatattcacatgaaatcactctggatccaaacacagcattc
acactgctgttattatctgattggaacagaaaagcaacatacacaagtcaacaacagtct
aattctagtcacccagacagattcactggatggcagcaggtcctgagtagagagagtctg
actggacgttgttactgggaggtggagtggagcgggacaggactttgtgtagcagtcgca
tacaagaatatcagcagagcaggctcaaaagaatgtagatttggattcaatgacaaatct
tgggctttacattattacaataacaaatatgaattgtggttcaacagcatctcaactccc
gtctcaggtcctggttcctccagagtcggagtgtacctggatcacagagcaggtattctg
tccttctacagcgtctctgaaaccatgactctcctccacagagtccagaccacattcact
cagcctctctatgctggagttagacttaatgcttatggaaacacagctgagttgtgtaaa
gtgaaatag
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