Scomber japonicus (chub mackerel): 128368952
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Entry
128368952 CDS
T09718
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03013
Nucleocytoplasmic transport
sjo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128368952
03015 mRNA surveillance pathway
128368952
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128368952
Enzymes [BR:
sjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
128368952
5.6.2.5 RNA 5'-3' helicase
128368952
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
128368952
mRNA cycle factors
Common to processing body (P body) and stress granule
128368952
BRITE hierarchy
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
SRP54
UvrD-helicase
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
128368952
NCBI-ProteinID:
XP_053185857
LinkDB
All DBs
Position
12:13876673..13891677
Genome browser
AA seq
1112 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDSQVNG
PDGVLQNGDDPVIKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPPWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLAL
HNQTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAGDRVKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
TINPGGRFMSTAMYDAREALIPGSVYDRSSNGRTSNMYFQTHDQIGMIGTGPNPMTSMNL
PIPFNLVMPPIPPPGYMGQVNGPTTGRGGGMKGKAGSGGGGGNRGGRQRNRGNMGNHSGG
NGGQHGGHMSGSQASQDLGSQPFSQGPLTQGYINMSQPSQMSQPGLSQPELSQDSYLGDE
FKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgaggcgtacgggccgagctcccagactctaacgttcctggacaccgaggaa
gccgagctgctgggagcggacacccagggctccgagtacgacttcaccgacttcaccctg
ccgagccagactcagacccagggccaaacccagagtcagctggacagccaggttaatggt
cctgacggggtgctgcagaatggagacgaccctgtaattaaagccagtcagttgttggcg
gagttgaactttgaggaggatgaggaagacacctactataccaaggatcttcctgtgcat
gcctgcagttactgtgggattcatgacccagcctgtgtggtgtactgcaacactagcaag
aagtggttttgcaacggccgtggaaacacatccggcagccacattgtgaaccatctggtg
agagcaaagtccaaggaggtgaccctgcataaagacggccctctgggggaaactgtgctg
gagtgctacaactgcggctgccgcaatgtcttcctgctgggcttcatccccgcaaaggct
gactcagtagtggtgttactgtgcaggcagccatgtgccagccagagcagcctgaaagac
atcaactgggacagctcgcagtggcagcctctcattcaggaccgctgcttcctgtcctgg
ctggtcaaaatcccgtcagagcaggagcagctcagggcccgccagatcaccgcccagcag
atcaacaagctagaggaactctggaaggaaaatcccaccgctaccttggaggatttagag
aagcctggtgtggatgaggagccccaacatgtcctgctacgttatgaggatgcctaccaa
taccagaacatatttggtcctcttgtgaagctggaggctgactatgacaagaaactcaaa
gaatcccagactcaagacaacattacagtcagatgggacttgggtctgaacaaaaagagg
attgcttatttcaccctgcccaaaacagattcagatatgcgactaatgcagggagatgaa
atttgcctgaggtacaaaggagacctggctcctccatggaaaggcattggacatgtcatc
aaagttcctgataactatggtgatgagattgccatagagctgaggagcagtgctggggct
ccagtggagatcccacacaactttcaggtcgactttgtgtggaagtccacttcctttgac
aggatgcaaagcgccctaaagacatttgctgtggatgagacgtcagtgtctggttacatc
taccataaactgctgggacatgaggtggaggatgtggtcatcaagtgccagctgcctaaa
cgcttcactgcccaaggactacctgacctcaaccactcccaggtgtatgctgtaaagacg
gtgctgcagcgtcccctcagcctgatccagggtcctcctggcacagggaagactgtaact
tctgccaccatcgtgtaccacctggctagacagggcaacgggccggtgcttgtgtgtgct
cccagtaacattgccgttgaccagttgacagagaagatccaccagactggacttaaagta
gtgaggttgtgtgccaagagcagggaggccatcgactcacctgtgtccttcttggctctg
cacaaccagacccgtaacatggacagtatgccagaacttcagaagcttcaacaactgaag
gatgagacaggagagttgtcctcctcagacgagaaacgctacagggctctgagacgcact
gctgagagggagctgcttatgaatgctgatgtgatctgctgcacttgtgttggggcgggg
gatcctcgtctggctaagatgcagtttagatcaatcctgattgatgagagcacccaggcc
accgaacctgagtgcatggtgcctgtcgtcctgggtgccaagcagctgatcctggtgggt
gatcactgccagctgggccctgttgtgatgtgtaagaaggcagctaaagcaggtctctcc
cagtctctgtttgagcgcctggtagtcttagggatacggccaattcgtctgcaggtccag
taccgtatgcacccggcactcagcgccttcccctccaacatcttctatgagggctccctg
cagaacggagtcactgccggagaccgtgtgaagaaaggctttgacttccagtggccgcag
cctgacaagccgatgttcttctatgtcacccaaggccaagaggaaattgccagctctgga
acatcatatctcaacagaactgaggcagccaatgtggagaaaataaccaccaggttgctg
aaggctggagcaaaacctgatcagatcggcatcatcaccccttatgagggacagaggtct
tacctggtccagtacatgcagttcagcggctccctccataccaaactgtaccaggaggtg
gagatcgccagtgtggatgctttccaaggcagagagaaagacttcatcatcctgtcctgt
gtgagggccaatgagcaccagggcatcggcttcctcaatgatccacgtcgcctcaacgta
gcgctcaccagggccaggtatggtgtgatcattgtgggaaaccccaaagctctgtctaag
cagcccctgtggaaccacctgttgaactactacaaggagcagaaggtcttggtcgagggc
ccccttaacaacctgagagagagcctcatgcagttcagcaagcctcgcaagctggtcaac
accataaaccctgggggtcgatttatgagcacagccatgtatgatgccagggaggccctc
attcctggatctgtttatgatcgcagcagcaacgggcgcacgtccaacatgtatttccag
actcatgaccagattggtatgattggcacaggccctaatcccatgacttccatgaacctc
cctatccccttcaacctagtgatgccccccatacctccacctggctacatgggacaagtc
aacggacccacaacaggtcgtggtggtggtatgaaaggcaaggcaggcagtggaggaggt
ggcggcaacagaggtggccgtcaaagaaaccgcggcaacatggggaaccacagcggaggg
aacggagggcagcatggaggccatatgagcggcagtcaggccagccaggacctgggctcc
cagcctttctcccaggggcctctgacgcagggctacatcaacatgagccagccgtcacag
atgagccagcccgggctctcccagcctgaactctcacaggacagttacctaggagacgag
tttaagtcccagattgatgtggctttgtcccaggactccacctaccagggggagcgggcc
taccaacacggtggtgtgactggactgtcccagtactag
DBGET
integrated database retrieval system
