Scomber japonicus (chub mackerel): 128371949
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Entry
128371949 CDS
T09718
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128371949 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sjo03041
]
128371949 (ddx46)
Enzymes [BR:
sjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128371949 (ddx46)
Spliceosome [BR:
sjo03041
]
Complex A
U2 snRNP components
U2 related factors
128371949 (ddx46)
Complex B
128371949 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
128371949
NCBI-ProteinID:
XP_053188349
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All DBs
Position
13:11455614..11467322
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AA seq
1059 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGSRSKSRSPDKRSKKDDRDRSRRERSRSRERRRSRSRDRKRA
RRSRSRERRRTRSRERRRSGSRSRARRSRSGSPSKSRRAKSVSKEKDSVDPVSDKKKTKE
EKEDEKVEDQDFDQNKLEEEMRKRKERVEKWREEQRKKAIENIGEIKKELEEMKQGKKWS
LEDDDDDDEEGSAPMEADDDEDGEGKGEKKEKDIKEEKREEGEKEQETPMEQQTEEDDVD
PLDAYMEEVKQEVKKFNMGAMKGNDKKGAMTVTKVVTVVKTKKGPHTHKKKGELMENDQD
AMEYSSEEEEVDLQTALTGFQTKQRKILEPVDHGKIQYEQFRKNFYVEVPELARMTPEDV
NAYRLEMEGITVKGKGSPKPIKTWVQCGVSMKILNALKKYSYDKPTPIQAQAIPSVMAGR
DLIGIAKTGSGKTIAFLLPMFRHIMDQRPLEESEGPISVIMTPTRELALQITKECKKFSK
PLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANSGRVTNLRRVTYVVLDE
ADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPLEVQVGGRSVVC
SDVEQHVLVIEEDKKFLKLLEILGHYQEKGSVIIFVDKQEHADALLKDLMKASYPCMSLH
GGIDQYDRDSIINDFKNGACRLMVATSVAARGLDVKQLILVVNYNCPNHYEDYVHRAGRT
GRAGNKGYAYTFITDDQVRYAGDIIKALELSGSPVPPELEQLWSSFRDQQKAEGKTIKSS
SGFSGKGFKFDETEHALANERKKLQKAALGLQDSDDEDGALDIEEQIESMFNSKKRVKDL
SAPGAATGPAGAVTATAAAPGGMPGLGPTSAGNIQKLEMAKRLALKINAQKNLGAEAQDV
MQQATNAILRGGTIMTPSVSAKTIAEQLAEKINAKLNYTPVEKLEEERQAAEQAETVKRY
EEELEINDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEGERKIYLAIES
ANELAVQKAKTEITRLIKEELIRLQNSYQPTSKGRYKVL
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atgggccgcgagtcgagacactacaggaagcgttccgcctctcggggacggtcagggagc
cgatcaaagagtcgctctccggacaaacgctccaagaaagacgaccgggaccggagcagg
agggagaggtcccggagcagggaacggcgccggtcacggtccagagacagaaagagagcc
aggcgctccaggagcagagagaggaggaggaccagaagcagagaaaggaggaggtcgggc
agcaggagccgagcccggaggtctcgatctggcagccccagcaagagcaggagagcaaag
tcagtaagcaaggagaaagacagtgttgatcctgtatctgataaaaaaaagactaaagag
gagaaggaagatgagaaggtggaggatcaagactttgaccagaacaagctagaggaggag
atgaggaagaggaaggagcgggtggaaaagtggagggaggaacaaaggaagaaggccatt
gaaaacatcggagagatcaagaaagaactggaggagatgaagcagggcaagaagtggagc
ctggaggatgatgatgatgatgatgaggaggggtcagctccaatggaggcagacgatgat
gaagatggggaagggaagggagagaagaaagagaaggatattaaggaggagaagagagag
gaaggtgagaaagagcaggaaactcctatggagcagcagactgaggaggatgatgtagat
cctctggacgcctacatggaggaggtcaaacaggaggtgaagaagttcaacatgggagcc
atgaaaggaaatgataagaagggagcaatgacagtcaccaaagttgtgacagttgtcaaa
acaaagaaaggacctcacactcacaagaagaagggtgagctgatggagaatgaccaggat
gcaatggagtactcatcagaggaggaggaggtggatctgcagacagctctgacaggcttc
caaaccaaacaaaggaagatcctggagcctgttgaccacgggaagatccagtacgagcaa
ttccgaaaaaacttctacgtggaggtgcctgagctcgccaggatgactccagaagatgtg
aatgcttaccggttggaaatggagggcattactgttaaagggaagggctctcccaaaccc
atcaagacctgggtgcagtgtggggtgtctatgaagattctcaatgccctgaagaagtac
agctacgacaagcccacccccattcaggcccaggccatcccttctgtcatggcaggccga
gacctcattggcattgctaagaccggcagcgggaaaaccatagctttcctgctgcccatg
ttccgacacatcatggaccagaggcccctggaagagtctgagggacccatctctgttatc
atgactccgaccagagagttggctctgcagatcaccaaggagtgcaagaaattctctaaa
ccgctgggactcagggtggtgtgtgtctatggaggcacaggtatcagtgaacagattgct
gagctgaagcgaggagctgagatcatcgtgtgcacacctggaagaatgattgacatgttg
ggtgccaacagtggtcgtgtcaccaacctacgcagagttacgtatgtggtgctggatgaa
gctgacaggatgtttgacatgggctttgagccacaggtaatgcgtattgtggacaatgtg
cgtccagaccgtcagacagtgatgttctcggccaccttccccagagccatggaggcgctg
gctcgtaggatcctgtcaaagcccctagaggtccaggtgggaggccgtagtgtggtctgc
tctgatgtggaacaacacgtgttagtgattgaggaggacaagaagttcctgaagcttctg
gagatccttggccactaccaggaaaagggctctgtcatcatctttgtggacaaacaggag
catgcagacgcgcttctcaaagacctgatgaaagcttcgtacccctgcatgtctctgcat
ggaggaattgaccagtacgacagagacagcatcatcaacgacttcaagaacggagcttgt
cgtctgatggtggcgacctcagtggctgccagaggcctggacgtcaaacagctgatcctg
gtggtcaactacaactgtccaaaccactatgaggactatgtccacagggcaggacgcaca
ggcagagctggaaacaagggttatgcctacactttcatcacagatgatcaggtacgctat
gctggcgatatcatcaaagccttggagctgtccggctctcctgttcctcccgaactggag
cagctttggagttccttcagagaccaacagaaagcggagggtaagaccattaagagcagc
agcggcttctcaggaaaaggctttaagtttgacgagacagaacacgctctggccaatgag
agaaagaagctgcagaaagctgctctcggcctgcaggactctgatgatgaggacggagcc
ctggatattgaggagcaaattgaaagcatgtttaactccaagaagagggtgaaggatctg
tctgctcctggggcggctactggtcctgcgggagcagtaaccgccacagcagctgctccc
ggaggcatgccaggcctcggacccacatctgctggaaacatccagaaactggagatggcc
aagaggttggctctcaagatcaacgctcagaaaaacctgggtgccgaagctcaggatgtg
atgcagcaggccaccaacgctatcctgcgtggcggcactatcatgacaccctctgtgtca
gccaagaccatcgcagagcagctggcggagaagatcaatgccaagctgaactacacccct
gtggagaagctggaggaggagcggcaggcagctgaacaggccgagactgtcaaaagatat
gaagaggagctggagatcaacgacttcccccagacggccaggtggaaggtgacgtcgaaa
gaagctctgcagaggatcggtgaatactctgaagctgccatcaccatcagaggaacatat
ttccctccaggcaaagagccaaaggagggagaacgcaagatctacctggctattgaaagt
gcaaatgaactggctgtacaaaaagccaaaacagagattacacgactaatcaaggaggag
ctcatcagattacaaaattcctaccagccgacgagcaaaggccgatacaaagtgttgtag
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integrated database retrieval system
