Scomber japonicus (chub mackerel): 128374686
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Entry
128374686 CDS
T09718
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 4-like isoform X1
KO
K11643
chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
128374686
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sjo03036
]
128374686
Chromosome and associated proteins [BR:
sjo03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
128374686
Chromatin remodeling factors
NuRD complex
128374686
BRITE hierarchy
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
DUF1087
Chromo
PHD
ResIII
HDA2-3
DEAD
Cep57_MT_bd
AAA_22
PHD_2
Motif
Other DBs
NCBI-GeneID:
128374686
NCBI-ProteinID:
XP_053190915
LinkDB
All DBs
Position
15:4550384..4573585
Genome browser
AA seq
1560 aa
AA seq
DB search
MEEDDHHMEFCRVCKDGGELLCCDSCPSSYHIHCLNPPLPEIPNGEWICPRCLCPPMKGK
VQKILTWQWGEPPPPTPVPRPPDLAADAPDPAPLAGRPEREFFAKWSNMSYWHCSWVTEL
QLELHCQVMFRNYQRKNDMDEPPPIDFGDGDEDKSVKRKNKDPMYAELEEKYLRFGIKME
WLMIHRIINHSVDRKNNVHYLIKWRELAYDQATWEAEDMDVPEFDIYKIQYWNHRELMMG
EEGRPGKKIKVKGRVKRPDRPPENPVVDPTIKFERQPEYLDSTGGTLHPYQLEGLNWLRF
SWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAP
DMYVVTYVGDKDSRAVIRENEFSFEDNAIRGGKKASRMKKDSSIKFHVLLTSYELITIDM
AILGSIDWACLVVDEAHRLKNNQSKFFRVLNNYPLQHKLLLTGTPLQNNLEELFHLLNFL
TPERFSNLEGFLEEFADIAKEDQIKKLHDMLGPHMLRRLKADVFKHMPSKTELIVRVELS
PMQKKYYKFILTKNFEALNTKGGGNQVSLLNVVMDLKKCCNHPYLFPAAAMEAPKMPNGM
YDGQSLTKSAGKLMLLQKMMRKLKDGGHRVLIFSQMTKMLDLLEDFLENEGYKYERIDGG
ITGGMRQEAIDRFNAPGAQQFAFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSR
AHRIGQNRKVMIYRFVTKASVEERITQVAKKKMMLTHLVVRPGLGSKTGSMSKQELDDIL
KFGTEQLFKDELMGDMKGAQNKEEDSSIIHYDDKAIDRLLDRNQDATDDTELQSMNEYLS
SFKVAQYVVKDEEEEEEEVQREIIKQEESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRI
RKQVNYNDGSQEDRADWQDDQSDGQSDYSVASEEGDEDFDERTEANSRRPNRKGLRNDKD
KPLPPLLARVGGNIEVLGFNSRQRKAFLNAVMRYGMPPQDAFTTQWLVRDLRGKSEKEFK
AYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHVNGQWS
MPWMAELEENKRATGAQPESPGKTPSTGTPADTQPNTPAPGNPPTTVDDSTKTEDAEKEV
KKEGDAEKNGKDSTKTSSSSSEVIAIPDDDEKSPPAEPEKQQQEEKKNGEEPMETDKPSN
GEAAESTKEKEGGEKEEGESEKKSAEGGEETKSPTETKTEGSEVKPEDAEVKAEEKTEKM
DTTPPADEKKDLKEEKEAVKPEEATKLQNGDSSKEGTKEGSKEGSKEGSKEGNASATATA
TAATATAGGASEEKKKAKTRFMFNIADGGFTELHSLWQNEERAATVTKKTNEIWHRRHDY
WLLAGIIQHGYARWQDIQNDVKFAILNEPFKGEMNRGNFLEIKNKFLARRFKLLEQALVI
EEQLRRAAYLNMSEDPSHPSMALNTRFSEVECLAESHQHLSKESMSGNKPANAVLHKVLK
QLEELLSDMKADVTRLPATIARIPPVAVRLQMSERNILSRLASRGPETQTQAQTQQMSQQ
NT seq
4683 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagacgaccaccacatggagttctgcagggtctgtaaagacggaggcgagctg
ctctgctgcgactcgtgcccgtcgtcctatcacatccactgcctcaacccgcccctcccc
gaaatccccaacggagagtggatctgcccccgctgcctgtgcccccccatgaagggaaag
gtccagaagatcttgacctggcagtggggcgaacctcctcctcctacacctgtccctcgc
cctccagacctcgcggccgacgcccccgaccccgccccgctggcagggcggccggagagg
gagttcttcgccaaatggtccaacatgtcatactggcactgctcctgggtcactgagctg
cagctggaactccactgtcaggtgatgttcaggaactaccagaggaagaacgacatggac
gagccgccgcccatcgacttcggcgatggcgacgaggacaagagcgtgaagaggaagaac
aaagaccccatgtacgcggagctggaggagaaatacctccgcttcgggatcaagatggag
tggctcatgatccaccgcatcatcaatcacagcgtggacagaaagaacaacgtccactac
ctgataaagtggagagagctggcgtacgatcaggccacctgggaagctgaagacatggac
gtccccgagttcgacatctataagatccagtactggaaccacagagagctgatgatggga
gaggaggggagacccgggaagaagatcaaggtcaaaggtcgagtgaagcggcccgacaga
cctccagagaatcctgtggtcgacccgactatcaagttcgagcgtcagccggagtacctg
gacagcacggggggcacgctgcacccctaccagctggagggtctgaactggctccgcttc
tcctgggctcaaggtaccgacaccatcctggccgacgagatgggtctggggaagaccgtg
cagaccgccgtcttcctctactcgctctataaagagggtcactccaagggtccattcctg
gtcagcgctcctctctccaccatcattaactgggagcgagagtttgagatgtgggcgccc
gacatgtacgtggtgacgtacgtcggagacaaagacagccgagccgtcatccgagagaac
gagttctccttcgaagacaacgccatccgaggagggaagaaggcgtccaggatgaagaaa
gactcgtcgattaagttccacgtgctgctgacttcctacgagctgatcaccatcgacatg
gccatcctcggctccatagactgggcctgtctggtggtggacgaggcccacaggctgaaa
aacaaccagtccaagtttttccgggtgctgaataattaccccctgcagcacaaactgctg
ctgactggaacgcctctgcagaacaacctggaggagcttttccacctgctcaacttcctc
acgccggagagattcagtaacctcgaaggtttcctggaggagttcgccgacatcgccaag
gaggaccagatcaagaagctgcacgacatgctcggtcctcacatgctcaggaggctgaag
gccgacgtcttcaaacacatgccctcaaagacagagctcatcgtcagagtggagctcagc
cccatgcagaagaagtactacaaattcatcctgacgaaaaacttcgaggctctgaacacc
aaaggaggaggaaaccaggtttctctgctcaacgtcgtcatggacctcaagaaatgctgc
aaccacccctacctcttccccgcggctgctatggaagctccaaagatgcccaacgggatg
tacgacggtcagtctctcacaaagtctgccgggaaactgatgttgctgcagaagatgatg
aggaagctgaaggacggaggacacagggtactcatcttctctcagatgaccaagatgttg
gacctgctggaggacttcctggagaacgaaggctacaagtacgagaggattgacggagga
atcacaggagggatgagacaggaagctatcgaccgattcaacgctccgggtgctcagcag
tttgccttcctgctgtcgacgagggccggaggtttaggtatcaacctcgccaccgccgac
accgtcatcatctacgactctgactggaatcctcacaacgacatccaggccttcagcaga
gctcatcgtatcggtcagaacaggaaggtgatgatctaccgcttcgtcaccaaagcttcg
gtggaggagaggatcactcaggtcgccaagaagaagatgatgctgactcacttggtggtc
cgacccggtctcggctcaaagaccggctccatgtccaaacaggaactggacgacatcctc
aagttcggaacggagcagctgttcaaggacgagttgatgggagacatgaaaggcgctcag
aacaaagaggaagacagcagcatcattcactatgacgacaaagccatcgaccgtctgctg
gacaggaaccaggacgccaccgacgacacggagctgcagagcatgaacgagtatctgagc
tccttcaaggtggctcagtatgtggtcaaagacgaggaggaggaggaggaggaagtgcag
cgtgagatcatcaagcaggaggagagcgtggatccagactactgggagaaactcctgcgt
caccactacgagcagcagcaggaagatctggcccgaaacctcggcaaaggcaaacgtatc
cggaaacaggtcaactacaacgacggctcacaggaggacagagctgattggcaggacgac
cagtctgacggccaatcggattactctgtggcgtctgaggagggagacgaagactttgac
gagcgaacagaagcgaactcccgcaggccgaacaggaagggcctgaggaacgacaaagac
aagccgctgccccccctgctggccagggtgggaggcaacatcgaggtgttgggtttcaac
tctcggcagaggaaggccttcctgaacgcagtgatgcgttatgggatgcctcctcaggat
gccttcaccacccagtggctggtccgagacctgcgagggaaatctgagaaggagttcaaa
gcgtacgtctctctgttcatgcgtcatctctgtgaacccggagccgacggagccgagacc
tttgccgacggcgttccaagggaagggttgtcacggcaacacgtactcacccgcattggc
gtcatgtcgcttatacgcaagaaggttcaggagtttgagcatgtgaacggtcagtggtcg
atgccgtggatggccgagctggaggagaacaaacgagccaccggcgctcagccagagtct
ccaggaaaaaccccgtcgactggaactcctgctgacacacagccgaacacccccgcacca
ggtaacccccccactacagtcgacgactccacgaagaccgaggacgcggagaaggaggtg
aagaaagaaggagacgcagaaaagaacggcaaagactccacgaagaccagcagcagcagc
agcgaggtgatcgcgatcccagacgacgacgagaagagtccgccggccgaaccggagaag
caacaacaagaggagaagaagaacggagaggagccgatggagacggacaaaccgagcaac
ggagaggcagcggagagcacgaaggagaaggagggaggagagaaggaggagggagagagc
gagaagaagagcgccgagggaggagaggagacaaagtcaccgacagagacaaagacggag
gggtcagaggtcaaacctgaagacgctgaagtcaaagcagaagaaaagacagaaaagatg
gacaccacacctcctgcagacgaaaagaaagatctgaaggaggagaaggaggcggtgaag
ccggaggaggcaaccaaactgcagaacggagacagcagcaaagaaggaaccaaggaggga
agcaaagaaggaagtaaagagggaagtaaagaaggaaacgcctcggccaccgccactgcc
accgccgccacggcaacagcaggaggagccagcgaggagaagaagaaggccaagacccgc
ttcatgtttaacatcgctgacggaggattcacagagcttcactctttgtggcagaacgag
gagcgcgccgccacggttaccaagaaaaccaatgagatctggcaccgtcgccatgactac
tggctgctggccggcatcatacaacacggttacgctcgctggcaggacattcagaacgac
gtgaagttcgccatcctcaacgagcctttcaaaggagagatgaaccgagggaacttcctg
gaaatcaagaacaagttcctcgccagaaggttcaagctgttggagcaggcgctggtcatc
gaggagcagctgcgtcgcgccgcctacctcaacatgtcggaggacccctcccacccctcc
atggccctcaacacccgcttcagcgaggtggagtgtctggccgagtcccaccagcacctc
agcaaggagtccatgtccgggaacaagccggccaacgccgtcctgcacaaagtgctgaag
cagctggaggagctgctgagtgacatgaaggcagatgtcacccgcctcccggcaaccatt
gcccggataccgccggttgccgtgcgactccagatgtccgagaggaacatcctgagccgg
ctggcgagccgaggacccgagacacagacgcaggcacagacacaacagatgtcgcagcag
tag
DBGET
integrated database retrieval system
