Scomber japonicus (chub mackerel): 128381731
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Entry
128381731 CDS
T09718
Name
(RefSeq) transcription factor Sox-8-like
KO
K09270
transcription factor SOX7/8/10/18 (SOX group E/F)
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sjo03000
]
128381731
Transcription factors [BR:
sjo03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
128381731
BRITE hierarchy
Motif
Pfam:
HMG_box
Sox_N
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
128381731
NCBI-ProteinID:
XP_053197745
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All DBs
Position
20:complement(21349674..21352048)
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AA seq
474 aa
AA seq
DB search
MTEENKSLTDHLCSPTGSDSSFSLHGSGSESPTSSAGSDAQGAAHPDRIAHNAERGAEDE
RFPVCIRDAVSQVLKGYDWSLVPMPSQGERGLKTKPHVKRPMNAFMVWAQAARRKLADQY
PHLHNAELSKTLGKLWRLLSETEKRPFIEEADRLRLQHKKDYPDYKYQPRRRKSSKPGQG
DCRSGLVQQHHQGLYKPDPGVARLSDRTGQSHGPPTPPTTPKIDLHMGTKHESHRPIEGS
VPPTGRQNIDFSNVDISELSSDVISTIDGFDVHEFDQYLPPNSRTTTVLTTPETSNGHNN
PSGSFILPSIHSHSHSHSHSIPTWTPKTGTSIAMAPSSSDRHTYGIHEDSSQKPQIKTEQ
MSPGHYSSHSSQCSSSATPPPPHQPEYTSLGSGTCSSSTSSTSSASQSDYTDLQSSGFYS
AFSGYPAGLYQYPYFHSSHRPYATPLINSLALAPPPHSPPSGWEQPIYTTLTRP
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgacagaggagaacaagtccttgacagaccatctgtgcagccccacaggcagcgacagc
tccttctcgctgcatggatcaggttcagagtccccgacttcttcagcagggtccgacgcg
caaggagcagcgcacccggataggattgcgcacaatgcggagagaggcgcagaggatgag
cggtttcccgtctgcatccgcgacgcagtgtctcaggtgctgaaaggttacgactggtcg
ctggtgccgatgcccagtcaaggggagagaggactgaagaccaaacctcatgtgaaacga
ccgatgaacgcgttcatggtgtgggcgcaggcggcacggaggaagctggcggaccagtat
cctcatctgcacaacgctgagctcagcaagacgctggggaaactatggcgacttctctct
gagactgagaagcgtcccttcattgaggaggctgatagactgaggctgcagcacaagaaa
gactacccagactacaagtaccagcctcggagacgcaagagctccaaaccgggtcagggg
gactgcagatccggcctggtccagcagcaccaccagggcttgtataaaccagacccaggg
gtggccaggttgtctgacaggacaggtcagtctcatggacctccaacacctcctactacc
cctaaaatcgaccttcacatggggaccaaacacgagagccacaggcctatagagggttct
gttccacccaccggccgtcagaacattgacttcagtaatgtggacatctctgagcttagc
agtgatgtcataagcaccatagatggatttgatgtccatgagttcgaccagtacctgcct
cccaacagccgcaccaccacagttctaaccacgccagaaaccagcaacggacataacaac
ccctctggatcattcatcttacccagcatccactctcactctcactctcactctcacagc
attcccacgtggacacccaagaccgggacttccattgcaatggcaccatcatcttctgat
cgtcacacctatggaatccacgaggacagcagccagaaacctcaaatcaaaactgagcag
atgagtccaggacactacagcagccactcctcccaatgctcatcctctgccacccctcct
ccacctcatcaacctgagtacacctccctgggctcaggcacctgctcttcctccacctct
tccacctcttctgccagccagtctgactacactgaccttcagagctccggtttctacagc
gccttttctgggtaccctgctggtctgtatcagtacccatacttccactcctcccacaga
ccttatgctacaccacttatcaacagcctggccttggcaccaccaccacacagtcctccc
tctggctgggagcagcctatctatacaacactcaccaggccttga
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