Scomber japonicus (chub mackerel): 128383920
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Entry
128383920 CDS
T09718
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM47-like
KO
K12006
tripartite motif-containing protein 16
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sjo04121
]
128383920
Ubiquitin system [BR:
sjo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
128383920
BRITE hierarchy
Motif
Pfam:
zf-RING_UBOX
zf-B_box
zf-C3HC4_4
zf-C3HC4
SPRY
zf-C3HC4_2
zf-C3HC4_3
PRY
zf-RING_5
zf-RING_2
U-box
FYDLN_acid
zf-ANAPC11
zf-RING_6
zf-RING_10
Zn_ribbon_SprT
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
128383920
NCBI-ProteinID:
XP_053199477
LinkDB
All DBs
Position
22:18871520..18875354
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AA seq
562 aa
AA seq
DB search
MAEKKHKQEERCGVDLNPDQFRCSVCLELLIEPVTLHCGHSFCQHCIKRFWDVENVKGEY
TCPDCRERFSPRPVLRRNNTLAEVVEKLKRSQTQQTSPSAPLACDAPTNVACDFCGGAEP
MKATMSCLTCLASYCPAHLQAHYSVPVLMKHQLVSAMVPLCTKICTEHSKLMEIYCQTDK
QLVCSLCTVKDHEGHKTVPVSVQKAESEKWLVSTQKKVQERVQQGEEEQTKLSQAEENLK
SCAEAAVKDCDKLFDQLISMQKRRSEVKQLIIAQEKTAITQVKELRLQQGKEIAKLRTRD
ALLERLLHTDDHIYLIQTLSNFCDPPEVSVGAGPPRSFRDVTDCVSELRDQLEAMLKDTW
PRISVTASYVDFTLTPEPTTREECLQYRCPLTLDVNSNYAYLYLVDNMHMMKPSPSPYSA
HPDRFTKFAQVLCEEGLSKQCYWEVQWYGRSLSAAVSYKDISRTTDDSRFGSNNKSWSLE
CTSKGYSFHHNNVETPVSGPCSYKIGVYLDYKAGILCFYHVSDSVVLLHKVQTTFTQPLH
PGLGLNYEWYDAGVYAQLVKLL
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atggctgagaagaaacataaacaagaggagaggtgtggagttgacctgaacccggatcag
ttccgctgttcagtatgtctggagctgcttatagagccagtcactcttcattgcggtcat
agtttctgccaacactgtataaaacgcttctgggacgtggagaatgtgaagggagagtac
acctgccccgactgcagagagagattcagtcccaggcctgtgctgcggaggaacaacacg
ctggctgaggttgtggagaagctgaagaggagtcagacccagcagacttctccctctgct
cctctggcttgtgatgccccgacaaatgttgcctgtgatttctgcggtggtgccgaaccc
atgaaagccactatgtcttgcctgacgtgcttggcatcatactgtccagcccacctacag
gctcactacagtgttcctgtgttgatgaagcaccagctggtctctgctatggtcccgctg
tgtacgaagatatgtacagagcacagcaagctgatggagatctactgtcagacagacaag
cagcttgtttgctctctgtgcactgtaaaagaccatgagggccacaaaacagtccctgtt
tcagtacagaaggctgagtcagagaaatggctggtctcaactcaaaagaaagtccaggaa
agagtccagcagggagaggaggagcagacaaagctcagccaagcggaggagaatctcaag
agttgtgccgaggctgcagtgaaagactgtgacaagctcttcgaccagttgatctccatg
cagaaaagacgcagcgaggtgaagcagctgattatagcacaggagaagactgcaatcact
caggttaaagagctgcggctgcagcaggggaaagagattgctaagctgaggacaagagac
gctctcttggaacgactgctgcacaccgacgaccacatctatttgattcagactctttcc
aatttctgcgaccctccggaggtttcggttggagctggtcctccgcgctctttcagagat
gtgactgactgcgtgtctgagctgagagaccagctggaggccatgctgaaggacacgtgg
ccaaggatctctgtcacagcttcttatgttgacttcacgctgacaccagaaccaacaacc
agagaggagtgtttacaatatcgctgtcctctcacactggatgtgaactcaaactacgcc
tatctctacctggtagacaacatgcacatgatgaagccttctcccagcccatattctgct
cacccagacaggtttactaagtttgcacaagttctgtgcgaagagggtttgtcaaagcaa
tgttattgggaggtgcagtggtacggtcgctctctctctgcggcagtgtcatacaaagac
atcagccgaacaacggatgactcacggtttggaagcaacaacaagtcctggagcttagag
tgcacatcaaagggctactcgttccatcacaataatgtagaaacaccagtgtcaggacct
tgctcctacaagattggagtatatctggattataaagcaggcatcctgtgtttttatcat
gtctctgactcggtggtgctgctccacaaagttcagaccaccttcacacagcctctccat
cctggacttgggcttaactatgaatggtatgatgctggagtgtatgcacagctggtcaag
ttgttgtag
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