Sanguibacter keddieii: Sked_07780
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Entry
Sked_07780 CDS
T01214
Name
(GenBank) transcription-repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ske
Sanguibacter keddieii
Pathway
ske03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ske00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Sked_07780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ske03400
]
Sked_07780
Enzymes [BR:
ske01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sked_07780
DNA repair and recombination proteins [BR:
ske03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Sked_07780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACZ20731
UniProt:
D1BBG5
LinkDB
All DBs
Position
886021..889659
Genome browser
AA seq
1212 aa
AA seq
DB search
MNLTGIISALLEDSGARATVDRVRARGALDVIGPAGVRPPLLAAMAGARASDGLVPETGV
EGSRPLVVVTATGREADELASALRCYLPYDDVAVLPAWETLPHERLSPRSDTVAKRIAVF
RRLAHPSADLGMTGPVRVLVMPVRALLQPVVDGLGDLEPVRLETRDRADLADVADRLSAA
AYARVDMVERRGEFAVRGGILDVFPPTEDHPLRVEFWGEEVEEIRWFAVADQRSLEIADH
GVWAPPCREMLLTDDVRDRASALVEQLPGAAEMLDKMGAGIAVEGMESLAPVLVDRMVPV
LDLVPDDALVVLSDPERVRRRAHDLVATTQEFLAAAWTSAAAGGSTPIDLSAASFDTIED
ARDLSARRGLGWWTLSPFGLDNPEDDTDDEVPVQDPDADTLRIGAREVEAYHGDVARALD
DVRGLQHAGWRLIMTTEGHGPAKRMVEQLSGADAPARLVGEITGDPEGGVVLVTPAPLGP
GFVAPDLKIAVFSESDMTGRAGSSTRDMRKMPSKRRNVVDPLQLRAGDFVVHEQHGVGRF
VELVQRTLGGGAAAATREYLVVEYASSRRGQPGDRLFVPTDQLDQVTKYTGGESPALNKM
GGSDWAKTKGRAKKAIKEIASELIRLYSARMATKGHAFGPDTPWQRELEDAFAYTETPDQ
LATIDEVKQDMEKTIPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQH
YDTFAERYAGFPVVVKGLSRFQTDKEAKEIVDGLKEGTVDVVIGTHRLLSGSIKFKDLGL
VVVDEEQRFGVEHKETLKQLRTNVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEERHP
VLTYVGAYDDKQITAAIRRELLREGQLFYVHNKVDSIDRTAARLKELVPEARIEVAHGKM
GEHQLERVIMDFWEKKFDVLVCTTIIETGLDISNANTLILERADMLGLSQLHQLRGRVGR
GRDRAYAYFLYPPERPLTETAHDRLATIAANTDLGSGMAVAMKDLEIRGAGNLLGGEQSG
HIAGVGFDLYVRMVGEAVAAFRGEAEEEAPEVTIELPVDAHLPHDYIGHERLRLEAYRKI
AAAQDETALTDIRAELVDRYGALPEVVGNLFDVAAFRNYARAAGLSDITAQGKFVRFAPV
DLAESAELRLKRLYPGTILKPAIRSVLVPFPTTGRIGGRPLRGAEILAWATELIDAVIKG
DVSAAASVGTRR
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgaatctcacgggcatcatctccgctctcctcgaggactcgggcgcgcgcgccacggtc
gaccgtgtgcgtgcccgcggcgcgctcgacgtcatcggcccggccggtgtgcgtccgccg
ctgctcgccgccatggcgggggcccgggcgagcgacgggctcgtgcccgagaccggtgtg
gagggctcgcgcccgctcgtcgtcgtcaccgcgaccgggcgtgaggccgacgagctcgcc
tccgcgctgcgctgctacctgccctacgacgacgtcgccgtgctgcccgcgtgggagacg
ctgccgcacgagcggctgtcgccgcgctcggacaccgtggccaagcgcatcgccgtgttc
cgccggctcgcccacccctcggccgacctcggcatgaccggtcccgtgcgggtgctcgtc
atgcccgtgcgcgccctgctgcagcccgtcgtcgacggcctcggcgacctcgagccggtg
cgcctcgagacgcgcgaccgcgccgacctggccgacgtcgccgaccgcctctccgcagct
gcctacgcgcgcgtcgacatggtcgagcgtcgcggcgagttcgccgtccgcggtggcatc
ctcgacgtgttcccgccgaccgaggaccacccgctacgcgtggagttctggggtgaggag
gtcgaggagatccgctggttcgcggtcgccgaccagcgctcgctcgagatcgccgaccac
ggcgtgtgggcaccgccgtgccgcgagatgctcctcaccgacgacgtccgcgaccgtgcc
tccgctctcgtggaacagctgccgggcgcagccgagatgctcgacaagatgggtgcgggc
atcgccgtcgagggcatggagtccctcgcgccggtcctcgtcgaccgtatggtccccgtc
ctcgacctcgtgccggacgacgcgctcgtcgtgctgagcgaccccgagcgtgtgcgccgc
cgcgcgcacgacctcgtggccaccacccaggagttcctcgccgccgcgtggacgtcggct
gcggctggcggctcgacgcccatcgacctgagcgcggcgtccttcgacaccatcgaggac
gcccgcgacctctcggcccgtcgcggcctcggctggtggaccctcagccccttcgggctc
gacaaccccgaggacgacaccgacgacgaggtgcccgtccaggaccctgacgccgacacg
ctgcgcatcggcgcgcgtgaggtcgaggcgtaccacggtgacgtggcgcgggccctcgac
gacgtgcgcggcctgcagcacgccgggtggcgcctcatcatgaccaccgagggtcacggt
cccgccaagcgcatggtcgagcagctcagcggcgccgacgcgccggcgcgcctcgtcggc
gagatcaccggcgaccccgagggcggcgtcgtcctcgtgacccccgcgccgctcggcccg
gggttcgtcgcgcccgacctcaagatcgcggtgttctccgagtcggacatgaccggccgc
gccgggtcgtcgacccgtgacatgcgcaagatgccgtccaagcggcgcaacgtcgtcgac
ccgctgcagctgcgcgccggggacttcgtggtccacgagcagcacggtgtcggacgcttc
gtcgagctggtgcagcgcaccctcggcggtggcgcggccgccgcgacccgcgagtacctc
gtggtcgagtacgcctcctcgcggcgcggacagccgggcgaccggctgttcgtgcccacc
gaccagctcgaccaggtgaccaagtacaccggtggcgagtcgcccgccctcaacaagatg
ggtggctcggactgggccaagaccaagggccgcgccaagaaggccatcaaggagatcgcc
tcggagctcatccgcctgtactcggcgcgcatggccacgaaggggcacgccttcgggccg
gacaccccgtggcagcgcgagctcgaggacgccttcgcgtacacggagacgcccgaccag
ctggcgaccatcgacgaggtcaagcaggacatggagaagacgatccccatggaccgtctg
gtctgcggcgacgtcggctacggcaagaccgagatcgcggtgcgggcggccttcaaggcc
gtgcaggacggcaagcaggtcgcggtcctcgtgccgacgacgctgctcgtgcagcagcac
tacgacaccttcgccgagcggtacgccgggttccccgtggtggtcaagggcctctcgcgc
ttccagacggacaaggaggccaaggagatcgtcgacggcctcaaggaggggacggtcgac
gtggtcatcggcacgcaccgcctgctgtccgggtcgatcaagttcaaggacctggggctg
gtggtggtcgacgaggagcagcgcttcggtgtcgagcacaaggagaccctcaagcagctg
cgcaccaacgtcgacgtgctcgccatgagcgcgacgccgatccccaggaccctcgagatg
gctgtcacggggatccgtgagatgtcgacgctcgcgacgccgccggaggagcgccacccg
gtgctcacctacgtcggtgcgtacgacgacaagcagatcaccgcggcgatccgccgtgag
ctgctccgtgagggccagctgttctacgtgcacaacaaggtcgactcgatcgaccggacc
gcggcccgcctcaaggagctggtgccggaggcgcgcatcgaggtggcgcacgggaagatg
ggcgagcaccagctggagcgcgtcatcatggacttctgggagaagaagttcgacgtgctg
gtctgcacgaccatcatcgagacggggctggacatctcgaacgcgaacaccctgatcctc
gagcgcgcggacatgctgggcctgtcgcagctgcaccagctgcgcgggcgcgtgggtcgt
gggcgggaccgtgcgtacgcgtacttcctctacccgccggagcggccgctgacggagact
gcgcacgaccgtctggcgaccatcgccgcgaacacggacctgggctcgggcatggcggtg
gccatgaaggacctggagatccgtggtgcgggcaacctgctgggtggtgagcagtcgggg
cacatcgcgggggtgggcttcgacctgtacgtgcggatggtcggcgaggcggtcgcggcg
ttccgtggtgaggcggaggaggaggcccccgaggtcaccatcgagctcccggtcgacgcg
cacctgccgcacgactacatcgggcacgagcggctgcgcctcgaggcgtaccggaagatc
gctgcggcgcaggacgagacggcgctcacggacatccgtgcggagctcgtggacaggtac
ggtgcgctgcccgaggtggtgggcaacctgttcgacgtggcggcgttccgcaactacgcc
cgtgcggcgggcctgtcggacatcaccgcgcagggcaagttcgtgcgcttcgcgcccgtc
gacctggccgagtccgctgagctgcgcctcaagcgcctgtacccgggcaccatcctcaag
cccgcgatccgctccgtgctcgtgcccttcccgacgaccggccgcatcggcggccgcccg
ctgcgaggcgccgagatcctcgcctgggcgaccgagctcatcgacgcggtgatcaagggc
gacgtgagtgcggcggcttcggtggggacgcggcgctaa
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