Sanguibacter keddieii: Sked_13060
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Entry
Sked_13060 CDS
T01214
Name
(GenBank) DNA ligase D/DNA polymerase LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ske
Sanguibacter keddieii
Pathway
ske03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ske00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Sked_13060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ske03400
]
Sked_13060
Enzymes [BR:
ske01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Sked_13060
DNA repair and recombination proteins [BR:
ske03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Sked_13060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ACZ21247
UniProt:
D1BEG9
LinkDB
All DBs
Position
complement(1465983..1468541)
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AA seq
852 aa
AA seq
DB search
MPDDDTGAPSRAAQRETVTVDGHRVTLTNLSKVIYPETGTTKADVLAYLAAVAQPFVAHV
TGRPATRKRWVHGTGGPVFFQKNLEDSAPTWVHRRDIQHSDHVNTYPLVDDLATLTWLGQ
VAALEIHVPQWRFGRTGVEHRPDRLVLDLDPGPGTGLDECVQVALWAREILTGMDLEPFP
VTSGSKGIHLYAALDGAHDSDAVSAVAHELARALQADHPDLVVSDMKKSLREGKVLVDWS
QNNRNKTTISPYSLRGRDRPYVAAPRSWAELEAGGLTHLEADEVVARLERDGDLLAPLLT
GGHAALEPTTARMAGFERTDRLEVYRSKRDASKTPEPVPEASPTEASPGDGPAGSADPAA
PTFVIQEHHARALHYDFRLEHDGVLVSWALPKGEPVDTTHNRLGVQTEDHPLEYGSFEGT
IPRGEYGAGTVSIWDRGTYDLHKWREGEEVIVTLHSDGSGGTDRGSRRIALIHTAHTGGG
TSWLVHRMKDDGHSGGGAAGASGEEDDKAEVAGSAPGEGSASSSGSRDRPLTPMLATPGT
VDDLDEDDWAFEMKWDGIRAVATVVADRDGSPGSVRLTSRNGNDLTASYPELAALSGCVA
EDVVLDGEIVALDQGGRPSFGRLQSRMNLTARRDVAAAQKAQGVVYMAFDLVERSGRRTT
RVGYDGRRAALEELVTESGPVHVPPAFTSDAASALAASKELGLEGIVAKRRSSTYRPGRP
AHTWVKVKHVQTQEVVVVGWRTGNGARAQTLGSLLVAVPDATGTLRYAGRVGTGFTDATL
ERLATELARNPRQTPPVDDVPAADAGDAHWVRADRVGEVAHAGWTDQGRLRHPVWRGWRS
DKAPGDVVREDA
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
gtgccagacgacgacacaggggcgcccagtcgcgccgctcagcgcgagacagtcaccgtc
gacgggcaccgggtgacgctgacgaacctgtcgaaggtgatctacccggagaccgggacc
accaaggccgacgtgctggcctacctggcggccgtcgcgcagcccttcgtggcgcacgtg
accgggcgcccggcgacccgcaagcggtgggtgcacggcaccggcgggccggtgttcttc
cagaagaacctcgaggactccgcccccacgtgggtgcaccggcgggacatccagcactcc
gaccacgtcaacacgtacccgctggtcgacgacctcgcgacgctcacgtggctcggtcag
gtggcggcgctcgagatccacgtgccgcagtggcggttcggccggaccggggtcgagcac
cggcccgaccgcctggtgctcgacctcgaccccgggcccggcacagggctcgacgagtgc
gtgcaggtggcgctgtgggcacgggagatcctcaccggcatggacctcgagcccttcccc
gtgacgagcgggtccaaggggatccacctctacgcggccctggacggagcgcacgactcc
gacgcggtgagcgccgtcgcgcacgagctggcccgtgcgctccaggccgaccaccccgac
ctcgtggtgtccgacatgaagaagtcgctgcgcgagggcaaggtgctcgtcgactggtcg
cagaacaaccgcaacaagacgaccatcagcccgtactcgctgcgcggccgggaccgcccc
tacgtcgccgcaccgcgctcgtgggcagagctcgaggcgggcgggctcacccacctcgag
gccgacgaggtggtcgcccggctcgagcgcgacggtgacctgctcgccccgctgctcacg
ggcggtcatgccgcgctcgagccgaccactgcgcggatggcgggcttcgagcggacggac
cggctggaggtctaccggtcgaagcgcgatgcgtcgaagacccccgagccggtccctgag
gcctctccgaccgaggcgtcccccggcgacgggccggccggctctgcggacccggccgcc
ccgaccttcgtcatccaggagcaccacgcccgggctctgcactacgacttccggctcgag
cacgacggcgtgctcgtcagctgggctctgcccaagggcgagccggtggacacgacgcac
aaccggctcggcgtccagacggaggaccaccccctcgagtacgggagcttcgaggggacg
atcccgaggggcgagtacggcgcgggcaccgtgtcgatctgggaccgcggcacctacgac
ctgcacaagtggcgcgagggcgaagaggtcatcgtcacgctgcacagtgacggctcgggc
ggcacagaccgcgggtcgcggcgcatcgcactcatccacacggcgcacaccgggggtggg
acgtcgtggctcgtgcaccggatgaaggacgacgggcactcaggcggcggggctgcaggc
gcgtcgggcgaggaggacgacaaggcggaggtcgccgggtctgcgcccggggagggcagc
gcctcgtcgtccgggtcgcgcgaccgcccgctcaccccgatgctcgcgacgccggggacc
gtcgacgacctcgacgaggacgactgggccttcgagatgaagtgggacggcatccgcgcg
gtcgccaccgtggtggccgaccgtgacggctcccccgggtcggtccggttgaccagccgc
aacggcaacgacctcacggcgtcctaccccgagctcgcggccctgtccgggtgcgtggcc
gaggacgtggtgctcgacggtgagatcgtcgcgctcgaccagggtggccgcccgagcttc
ggccggctgcagagccggatgaacctcacggcacgacgcgacgtcgccgccgcgcagaag
gctcagggtgtcgtgtacatggccttcgacctcgtcgagcggtcggggcgccggaccacg
cgggtcggctacgacggccgccgggcggctctcgaggagctcgtgacggagtcggggccg
gtgcacgtaccaccggccttcacctccgacgcggcctcggccctcgcggccagcaaggag
ctcgggctcgagggcatcgtcgccaagcgccggtcgagcacctaccgcccgggccgtccg
gcgcacacctgggtcaaggtcaagcacgtgcagacacaggaggtggtggtcgtcggctgg
cgcaccggcaatggggcgcgggcccagaccctcggctccctgctggtcgccgtgcccgac
gccacggggacgctgcgctacgccggacgcgtcggcaccgggttcaccgacgcgacgctc
gagcgtctcgcgaccgagctggcccggaacccccgccagacccctccggtcgacgacgtc
cccgcggccgacgcgggcgacgcgcactgggtccgggccgaccgggtgggcgaggtcgcg
cacgccgggtggacggaccaggggcggctgcgccaccccgtgtggcgcgggtggcgcagc
gacaaggcgccgggcgacgtggtccgcgaggacgcctga
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