Streptomyces koelreuteriae: KJK29_22465
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Entry
KJK29_22465 CDS
T09603
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
skg
Streptomyces koelreuteriae
Pathway
skg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
skg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KJK29_22465 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
skg03400
]
KJK29_22465 (mfd)
Enzymes [BR:
skg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KJK29_22465 (mfd)
DNA repair and recombination proteins [BR:
skg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KJK29_22465 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
UB2H
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QWB25114
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All DBs
Position
4950332..4953865
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AA seq
1177 aa
AA seq
DB search
MSLHGLLDAVVRDPALAEAISAAADGNRMHVDLVGPPAARPFAVAALARDTGRPVLAVTA
TGREAEDLAAALRSLLPPEGVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRPDDP
ETGPVSVVVAPVRSVLQPQVKGLGDLEPVSLRPGQSVDLEEIVDALGAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRIEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTEDVRERARALAEQHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPKGAMAV
VCDPERVRTRASDLVATSQEFLQASWAATAGGGEAPIDVGAASLWSIADVRERARELDMM
WWSVSPFAADEELDADTLKLGMHAPETYRGDTAKALADTKGWLADGWRTVFVTEGHGPAA
RTVEVLGGEGIAARLDADLAEISPSLVHVACGSIEHGFVDTALGLAVLTETDLTGQRAAG
REGARMPARRRKTIDPLTLEPGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKR
GQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHAFGADTPWQRELEDAFPYAETPDQLTTIAEVKDDMEKTVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYAQFPVSVKALSRFQTDTEAKA
VLEGLREGSVDIVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAIRRELLREGQVFY
IHNRVESIDRAAARLREIVPEARIATAHGQMSEQSLEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRRQLETGG
IEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANTEEDVKAVREELVDRYGKL
PEPVENLLLVSGLRMLARACGVGEIVLQGTNIRFAPVELRESQELRLKRLYPGTVIKPAV
HQVLVPRPKTAKVGGKPLVGRELLGWVGEFLTSVLGS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgccgtagtcagagaccccgccctcgcggaagcgatc
agcgcggccgcagacggcaaccgcatgcacgtcgacctggtcggccccccggccgcccgc
cccttcgcggtcgccgccctggcccgggacacgggccgcccggtgctggccgtgacggcg
acgggccgcgaggccgaggacctggccgcggccctgcgctccctcctcccgccggaggga
gtggtggagtacccctcctgggagaccctcccgcacgagcggctcagcccccgcagcgac
accgtcggccgccgtctggccgtgctgcgccgcctggcccacccccgccccgacgacccc
gagaccggcccggtctccgtcgtcgtcgcgcccgtcaggtccgtgctccagccgcaggtc
aagggcctcggcgacctggagccggtctccctgagaccggggcagagcgtcgacctcgag
gagatcgtcgacgccctcggggccgcggcgtacgcgcgcgtggagctggtggagaagcgc
ggcgagttcgccgtgcgcggcggcatcctcgacgtgttcccgcccaccgaggaacacccc
ctgcgcatcgagttctggggcgacgacgtagaggagattcgctacttcaaggtcgccgac
cagcgctccctcgaagtcgccgagcacggcctgtgggcgccgccgtgccgtgaactgctg
ctcaccgaggacgtacgcgagcgtgcgcgggccctcgccgaacagcaccccgagctgggc
gagctgctcggcaagatcgccgagggcatcgcggtcgagggcatggagtccctcgccccg
gtcctggtcgacgacatggagctgctgctcgacgtactgcccaagggcgccatggccgtc
gtctgcgacccggagcgggtccgtacgcgcgcgtcggacctggtggccacctcgcaggag
ttcctccaggcctcctgggcggccaccgccggcggcggcgaggcgcccatcgacgtcggc
gcggcctccctgtggtccatcgcggacgtccgggagcgggcccgcgagctggacatgatg
tggtggtcggtgtcgccgttcgccgccgacgaggagctggacgccgacactctcaagctc
ggcatgcacgccccggagacctaccggggcgacaccgccaaggccctcgccgacaccaag
ggctggctcgccgacggctggcgcacggtgttcgtgaccgaggggcacggcccggccgcc
cgtacggtcgaggtgctgggcggcgagggcatcgcggcccgtctcgacgccgacctcgcc
gagatctccccgtccctggtgcatgtggcgtgcggctcgatcgagcacggcttcgtcgac
acggccctcggcctcgcggtgctcaccgagaccgacctgaccggccagagggccgcgggc
cgcgagggcgcccggatgccggcccgccgccgcaagaccatcgacccgctcaccctggag
ccgggcgactacatcgtccacgagcagcacggcgtgggccgctacatcgagatggtgcag
cgcaccgtgcagggcgcgacccgtgagtacctggtcgtggagtacgcgcccgccaagcgc
ggccagcccggcgaccgtctctacatccccaccgaccagctggagcagatcaccaagtac
gtcggcggcgaggcccccacgctgcaccggctgggcggcgccgactggacgaagaccaag
gcccgcgcgaagaaggccgtcaaggagatcgcggccgacctgatcaagctgtacagcgcg
cgcatggcggcccccgggcatgccttcggggccgacaccccctggcagcgcgagctggag
gacgccttcccctacgcggagacgcccgaccagctcaccaccatcgccgaggtcaaggac
gacatggagaagacggtcccgatggaccggctgatctgcggcgacgtcggctacggcaag
accgagatcgcggtccgggccgccttcaaggccgtccaggacggcaagcaggtggccgtc
ctggtgcccacgaccctgctggtgcagcagcacttcgggacgttcagcgagcgctacgcg
cagttcccggtcagcgtgaaggcgctctcccgcttccagaccgacaccgaggccaaggcg
gtcctggagggcctgcgcgagggctcggtggacatcgtcatcggcacgcaccggctgttc
tcgtcggagacgaagttcaaggacctcggcctggtcatcgtcgacgaggagcagcgcttc
ggcgtcgagcacaaggagcagctgaagaagctccgggcgaacgtcgacgtcctgacgatg
tccgcgacccccatccccaggaccctggagatggcggtcaccggcatccgggagatgtcg
acgatcaccaccccgcccgaggagcggcacccggtgctgaccttcgtgggcccctacgag
gagaagcagatcggcgccgccatccgccgtgaactgctgcgcgagggccaggtcttctac
atccacaaccgggtcgagtcgatcgaccgggcggcggcccggctgcgcgagatcgtcccc
gaggcgcgcatcgccaccgcccacggccagatgtcggagcagtcgctggagcaggtcgtc
gtcgacttctgggagaagaagttcgacgtgctcgtctccacgacgatcgtcgagtccggc
atcgacatctccaacgccaacacgctgatcgtggagcgcggcgacaacttcggcctgtcc
caactgcaccagctgcgcggccgggtggggcgtggccgcgagcgcgggtacgcctacttc
ctctacccgccggagaagccgctgaccgagaccgcgcacgagcggctcgcgaccatcgcg
cagcacaccgagatgggcgccggtatgtacgtggcgatgaaggacctggagatccgcggc
gcgggcaacctcctcggcggcgagcagtccggccacatcgcgggcgtcggcttcgacctg
tacgtgcggatggtgggcgaggccgtcgccgactaccggcgtcagctggagaccggcggg
atcgaggaggagccgccgctcgaggtcaagatcgagctgcccgtcgacgcgcacgtcccg
cacgactacgcgccgggcgagcggctccgtctccaggcgtaccgcgccatcgcctccgcc
aacacggaggaggacgtcaaggccgtccgcgaggaactcgtcgaccgctacggcaagctg
cccgagccggtggagaacctgctgctcgtctccggtctgcggatgctcgcgcgggcctgc
ggggtcggcgagatcgtgctccagggcaccaacatccgcttcgcccccgtggagttgcgc
gagtcgcaggaactgcggctcaagcggctctatcccgggacggtcatcaagccggcggtg
caccaggtgctggtgccgcgcccgaagaccgcgaaggtcggcggaaagccgctggtcggg
cgggagttgctgggctgggtcggggagttcctgacgtcggtgctggggtcctga
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