Saccoglossus kowalevskii (acorn worm): 100368962
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Entry
100368962 CDS
T04123
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46-like
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
sko
Saccoglossus kowalevskii (acorn worm)
Pathway
sko03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sko00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100368962
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sko03041
]
100368962
Enzymes [BR:
sko01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100368962
Spliceosome [BR:
sko03041
]
Complex A
U2 snRNP components
U2 related factors
100368962
Complex B
100368962
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
100368962
NCBI-ProteinID:
XP_006824047
LinkDB
All DBs
Position
Un
AA seq
1091 aa
AA seq
DB search
MPRETRHYRKRSRSSSRSSSGSPSPGRSKKRRSRSRDREKKDRYRCRSRSRERYRRSRSR
DRYERRRRSRSRERRELERERERERERRKFRRSRSRSRERKERERRRSKSRERDHRRSKS
RERDHRRSKSKERDHRRSKSKERDHRRSKSKEHVHRRSKSRERDHKRSRSRDRENKRSET
RPQERRRSRSKSKERRKSRSKSRERRQDRKSPSRIKEREHRAKTPTKNTETKIKKDKSGS
PALELEQKRLEEEMQRRRERIEKWRLERKKASQPTQPEPQKKQWSLEDESDDDEGEQQEE
EGKADKTEENGKDEDEKMETKKEEDDDVDPLDAFMQGVNDEVRQINMDDHKKRNKGSIAI
PAQGSACDWKVTVTKDFQMSTPSAWDFYVEVPEIAKMTEEDVISYRAELENVKVRGKGCP
KPIKAWVQCGVSKKVLDVLKKLKYEKPTPIQAQAIPAIMSGRNLIGIAKTGSGKTLAFLL
PMFRHIMDQDPLEADDGPLAVIMSPTRELAMQIYKECKRFCRALNVRGVCVYGGTGISEQ
IAELKRGAEIIVCTPGRMIDMLTANSGRVTNLRRCTYVVLDEADRMFDMGFEPQVMRIVD
NIRPDRQTVMFSATFPRQMEALARRILNKPLEVQVGGRSVVCSDVEQKVAIVDDDQKFLT
LLELLGVYQEQGSVLVFVEKQEGADQLLKDLMKASYSCLSLHGGIDQYDRDSAIQDFKAG
NIKLLIATSVAARGLDVKHLVLVVNYDCPNHYEDYVHRVGRTGRAGNKGNAFTFITPEQG
RYAGDIIKAFEMADKKAPPELLQLWSEFTEKQKAEGKSIMKSSGFSGKGFKFDETEKELA
NEKKKLQKAALGLQDSDEEDAGVDIDQQIENMFASKKSVKDVTVPVGGNPALVPGAPIAG
VAPTVGVNTEKLELAKMMAERINRNLEGSKDIMQQAAQTVMKGGMLAAPAVSAKTIADQM
AEKINAKLNYRPSPENEDSNSNEPPTETFRRYEEELEINDFPQTARWKVTSKENLAQIQE
YSEAGITIRGTYFPPGKEPKEGDRKLYLAIESTSEMAVQKSKKEITRLIKEELIRLQHSY
QPTNKGRYKVL
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgtgaaacaagacattacaggaaaagatctcgatcatcatcaagaagttcgtct
ggatctcccagtccgggcagatctaagaaaagacgttccagaagtcgagacagggaaaaa
aaggacagatatcgatgcagatctagatctcgtgaaagatatcgtagatctagatcaaga
gacagatatgaaaggcggagacgatcaagatcacgagaaagacgagaattggaaagagaa
agggaacgggaacgggaaagaagaaagttcagaaggtcaaggtcaagatcaagagaacgt
aaggaacgagaacggaggcgatcgaaaagcagggaacgggatcacagacgatcaaaaagc
agagaacgagatcacaggcgatcgaaaagcaaggaacgagatcacaggcgatcgaaaagc
aaggaacgagatcacaggcgatcgaaaagcaaggaacatgttcacagacgctcaaaaagc
agagaacgggatcacaaacgatccagaagcagggaccgtgaaaataaaagatctgaaact
agaccacaggaacggaggagatcaagaagtaaatcaaaagagcgtcgcaaatctagatcc
aaaagtcgtgaaagaagacaggacaggaaaagtccttcaaggataaaagaaagagagcat
cgagcaaaaacacctacgaaaaatacagagactaaaatcaaaaaggacaaatcaggatct
ccagccttggagttagagcagaagagactagaagaagaaatgcaacgtcgacgggagcgc
atcgaaaaatggagattagagagaaagaaagcaagccaaccaacgcagcctgaaccgcaa
aaaaaacagtggagtctggaagacgagtctgatgatgatgaaggagagcagcaagaagaa
gaaggaaaggctgataaaactgaggagaatggtaaagacgaagatgaaaaaatggaaacc
aagaaagaagaagatgatgatgttgatccgctagatgcattcatgcagggagtaaatgat
gaagtccgtcagattaacatggatgaccacaaaaaacgtaacaaaggcagtattgctatc
cctgcacaaggttctgcttgtgattggaaagttactgtgaccaaggatttccaaatgagt
acaccatctgcttgggatttctacgttgaagtgcctgaaatagcgaaaatgacagaggaa
gatgtaatatcgtatcgagcagagttggaaaatgtcaaagtacgcggtaaaggatgccct
aaaccaatcaaagcatgggtgcaatgtggggtttcaaagaaagtattggatgtactcaaa
aaactcaaatatgaaaaacctactccaattcaagcccaggcaatcccagcaataatgtct
ggtaggaaccttattggaattgccaaaactggtagtggcaagacattggcatttctacta
ccgatgttcagacatattatggatcaggatcctttagaggcagatgatggacccctcgct
gtcatcatgtcacccacacgtgagttagctatgcagatctacaaagaatgcaagaggttc
tgtcgggcacttaatgttaggggtgtctgtgtgtatggtggaacaggcattagtgaacag
attgctgaattaaaacgtggtgctgagatcatcgtttgcaccccaggaagaatgattgac
atgttgacagcaaacagcggtcgtgttactaatctgcgccgctgtacgtacgtagttttg
gacgaagcggaccgaatgtttgatatgggatttgaaccacaggtgatgagaattgtggat
aatattcggccggatcgtcagactgttatgttttcggcaacgtttcctcgtcagatggag
gcattagcaagacgtattctgaacaagccccttgaagtacaagtcggtggtcgaagtgtt
gtttgttcagatgtggaacagaaagttgctattgttgatgatgatcagaagtttcttact
ttactagaacttctaggggtttaccaggaacaaggaagtgttttagtttttgtagagaag
caagaaggagctgatcagctgttgaaagatctgatgaaagcatcttactcgtgtctttca
cttcatggtggtattgatcaatatgacagggactcagccattcaagatttcaaagctggc
aatattaaattgcttatagctacgtctgttgctgccagagggttggatgtgaaacatttg
gtattggttgttaattatgattgtccaaatcactatgaagattatgtacatagagtagga
cgtacaggaagggctgggaataaaggcaatgcctttacgtttattacaccagaacaaggc
agatatgctggtgatattataaaagcatttgagatggctgataagaaggcaccaccggaa
ttgcttcaactttggagtgaatttactgagaaacagaaagctgaaggaaagtctattatg
aagagcagtggtttcagtgggaaaggattcaagtttgatgaaactgaaaaagaattggcg
aatgagaaaaagaaactccagaaagctgctttgggattacaagactcggatgaagaagat
gctggtgtagatattgatcaacaaatagaaaacatgtttgcatcaaagaagagtgttaaa
gacgtaaccgttcctgttggtggtaatccagctcttgttcctggcgcacctatcgctgga
gttgctcctactgtaggtgtgaacacagagaaactggaattagctaagatgatggcagag
cgaatcaatcgaaaccttgaaggttctaaagacatcatgcaacaagcagcacagactgtt
atgaaaggtggaatgcttgcagctcctgctgtgtctgctaaaacaatagccgatcagatg
gctgagaagatcaacgctaaattaaattaccgaccatcaccagaaaatgaagacagtaat
tcaaatgaaccaccgactgaaacattccgtagatacgaagaggagttggaaatcaatgat
tttccacagacagcacgatggaaagtcacatcaaaggaaaatcttgcacagatccaagag
tacagtgaagctggcatcacaatccgaggtacctacttccctcccggtaaagaacctaaa
gaaggtgatagaaaattgtacctggcaattgaaagtacatctgaaatggcagtacaaaaa
tcaaaaaaggaaattacaaggttaatcaaagaagaattaataagattgcaacattcatat
caaccaaccaacaaaggaagatacaaagttctctga
DBGET
integrated database retrieval system