Skermanella sp. TT6: IGS68_15655
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Entry
IGS68_15655 CDS
T07020
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
skt
Skermanella sp. TT6
Brite
KEGG Orthology (KO) [BR:
skt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
IGS68_15655 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
skt03400
]
IGS68_15655 (ligD)
Enzymes [BR:
skt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
IGS68_15655 (ligD)
DNA repair and recombination proteins [BR:
skt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
IGS68_15655 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QQP87535
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Position
3311587..3312444
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AA seq
285 aa
AA seq
DB search
MPKATAETVEIAGITLTHPDRVLWPHQGVSKRTLAEYYADIADRVLSHVVNRPLTLVRCP
SGNDGACFVQKHPWTGLHQAVRRVRDGDDEWLAVDDMSGLAALVQAGVLELHPWGATTDD
LERPDRIVFDLDPDEGVPWAHVVEGARAIHAALEDLGLRGFVKATGGKGLHVVVPVEPHA
GWEAAKAFARDVAARLAAEWPERYTTNPQKEARSGRIFLDHLRNSRGATAVAAYSTRARP
GAPVAMPLAWETLGDAAAAPRYGMADLPAGDPWKGFFEVRQRLPG
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaagccaccgccgaaaccgtcgagatcgccgggatcacgctcacccatcccgac
cgggtgctctggccgcaccagggcgtctccaagcgcaccttggcggagtactatgccgac
atcgccgaccgcgttctgtcgcatgtggttaaccgaccgctgacgctggtgcgctgcccg
tccggcaacgacggcgcctgctttgtccaaaaacacccgtggaccgggctgcaccaggcc
gttcgcagggtccgcgacggcgacgacgaatggctggcggtggacgacatgagcggcttg
gcggcgctggtccaagcgggcgtgctggagttgcacccgtggggagccaccaccgacgac
ctggagcgcccggaccgcatcgtcttcgaccttgacccggacgagggcgtgccgtgggcg
cacgtggtggagggtgcaagggcaatccatgcggccttggaggatctgggcctgcgcggc
ttcgtcaaggcgaccggcggcaagggcctgcacgtggtggtcccggtcgagccgcatgcc
ggttgggaagcggccaaggcgttcgcgcgcgacgtggcggcgcggcttgcggcggagtgg
cccgagcgttacacgaccaacccgcagaaggaggcaaggagcggccgcatcttcctggac
cacctgcgcaacagccgcggcgccaccgcggtagccgcctactcgacccgcgcgcggccc
ggcgcgccggtggcgatgccactggcctgggagacgctgggcgacgccgccgctgcgccc
cgctacggcatggccgacttaccggccggcgatccgtggaagggcttcttcgaggtgcgg
caaaggctgccgggatga
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