Sulfuricurvum kujiense: Sulku_0522
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Entry
Sulku_0522 CDS
T01370
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sku
Sulfuricurvum kujiense
Pathway
sku03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sku00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Sulku_0522
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sku03400
]
Sulku_0522
Enzymes [BR:
sku01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sulku_0522
DNA repair and recombination proteins [BR:
sku03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Sulku_0522
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
CarD_TRCF_RID
UvrB_inter
ResIII
Motif
Other DBs
NCBI-ProteinID:
ADR33189
UniProt:
E4U024
LinkDB
All DBs
Position
501912..504899
Genome browser
AA seq
995 aa
AA seq
DB search
MSQARWYEYSKNNPKALPEILLCEDAKEASELSDVSTFLEIPHIVLPDFRATYMDDLRPF
GEELFALFAALRTYYTASKKPLIISPLKTLLFPMPHESLLQSETIEFASRIDLGSFKQKL
LHWGYTFVDMVEMEGEVSHRGDILDIYVPNQSNPYRISLFDDEVEEIKAFDVETQRTDKE
ELASIEVTSAFFSLDEQQHKAFEKAIAAAQSDSFVKDIASLGFWVLNEHGVDLCEGKKVS
RIREMKSVLDEAYGLNQPVLPRTRLEADILPESEKYTPLGGGNLETLRSVHKNKKFTLIA
ASDTQLKAAGIFDLKGILVKTSGIVLNLIGPDEIILSLNRHEKKRRRRRTSILLDDLKVG
DYVVHEEYGVGIFVGIEQAEILGGVKDLVVIKYMGDDKLLLPVENLDTIDRYIASGSLPV
LDRLGKGSFGKLKESVKARLFEIASEIVGIAASRALIKASVISVDAGELRRFQDAAGFDY
TPDQSSAISSIVRDLSSGHIMDRLLSGDVGFGKTEVAMNAIFAAAKGGYQSLLVVPTTLL
SSQHFQSLKTRLAPFGLRVAKLDRFVSTKEKNATLRALEAGELDCVVGTHALFGVSCKKL
GIVIIDEEHKFGVKQKEKLKSLYENVHLLSMSATPIPRSLNQALSSIKTMSELLTPPSER
LGVRTFVKNYDEKLIKEVILRELRRGGQVFYVHNSIDSMIIKSGELKAILPDLRILILHS
QISANQTEEELAKFANREYDVLLATSIIESGIHMPTVNTMIIDGADRFGMADLHQLRGRV
GRGHIEGYAYFIVDDKENLTEEAKKRLVALESNSFLGSGSMLAYHDLEIRGGGNLVGDAQ
SGHIKNIGYALYLRMLEDAIKLLTNQTTAVRAKVDIKLTVSAFISDEIVTEDRLRLELYR
RLSQCESPSEIYEIEEEVGDRFGKPDTPTKQFFEIMVIKLLCIEKKIKMVSNYNQNITIE
YQSGIKETLQSKSKDDDDLIGTVLHYLRTTKQKGL
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagcacgatggtatgaatatagtaaaaacaatccgaaagctctccccgagatt
cttctgtgcgaggatgcgaaagaggcgtcggaactgagcgacgtttccacttttttagaa
atcccccacatcgtattgcccgattttcgtgcgacctatatggacgatctcagaccgttt
ggcgaagagctatttgcccttttcgccgcacttcgaacctattatacagcctcaaaaaaa
ccgctgattatttccccgctcaaaacactcctttttccgatgccgcatgagagtttgctt
caaagcgagacgatcgagttcgcctcccgcatcgatctgggcagctttaaacaaaaactg
ctccattgggggtacacctttgttgatatggtggagatggagggggaggtatcgcaccgc
ggcgacatcctcgacatctacgtcccgaaccaaagcaacccctatcgtatcagcctcttt
gacgacgaggtcgaagagatcaaagcgtttgatgtcgaaacccagcgcaccgacaaagag
gaactggcctctatcgaagtgaccagcgcttttttctccctcgatgagcagcagcacaaa
gcgttcgaaaaagcgatagccgccgcacaaagcgacagcttcgtcaaagacattgcctcg
ctcgggttttgggtcttgaatgagcacggagtcgatctgtgcgaggggaaaaaagtctcg
cgtatccgtgagatgaaaagtgtcctcgacgaagcgtacggactcaatcaacccgtcttg
ccgcgaacgagactcgaagcagacatcctccccgaatccgaaaagtacactccattgggg
ggagggaatttagaaacccttcgaagcgtccataaaaacaaaaaatttaccctgatcgcc
gccagcgatacgcagctcaaagcggcggggatttttgatctaaaaggaatcttggttaaa
acatccgggatcgttctgaatctgatcggtcccgatgagatcatcctttctcttaaccgt
catgagaaaaagcgccgtcgccgccgtacctccattctcctcgatgatttgaaagtaggg
gactacgtcgtccacgaagagtacggggtcgggatattcgtcgggatcgaacaggcggag
attctcggcggggtgaaagacctcgtcgtcatcaaatacatgggggatgacaagcttctc
ctccccgtcgaaaaccttgatacgattgaccgctatatcgcctcagggagcctccccgtc
cttgatcgtctgggcaagggaagtttcggcaaactcaaagagtcggtcaaagcacggttg
ttcgagattgcctccgagatcgtcgggattgcggcgagccgtgcgctgatcaaagcgtcg
gtgatcagtgtcgatgcgggtgagcttcgaagattccaagatgctgccggatttgactac
actccggatcaatcaagtgcgatcagctcgatagtccgtgatctctcctccggtcatatc
atggatcgtttgctcagtggagatgtcggtttcgggaaaacggaggtggcgatgaacgct
attttcgccgccgcaaaagggggataccaatcgctcctcgtcgttccgaccaccttgctc
agttcccagcatttccaatcgcttaaaacccgtctcgcaccattcggtcttcgggtcgct
aagctcgaccgcttcgtcagcaccaaagagaaaaacgcaacccttcgggcgcttgaagcg
ggggaactcgactgtgtcgtcggaacccacgccctgttcggggtgagctgtaagaagctc
ggaatcgtcattatcgatgaagagcacaaattcggggtaaaacaaaaagagaaactcaaa
tcgctctatgaaaacgtccaccttctcagcatgagcgcgaccccgatcccgcgcagtctt
aatcaggcgctcagttcgattaagacgatgtccgagcttctcacccctccgagcgagcgc
ttaggggtacggacatttgtgaaaaactacgacgagaaactgatcaaagaggttatcttg
cgcgagcttcgccgcggcggtcaggtgttttacgtccacaactctatcgattcgatgatc
atcaaatcgggtgagctgaaagcgatcctccccgatctgcgtatactcatcctccactct
cagatcagtgcaaatcagaccgaggaggaactggcgaaatttgcgaatcgcgaatacgat
gtccttctcgcaacctccatcatcgaatcggggattcatatgccgacggttaacacaatg
attatcgacggagcggaccgtttcgggatggccgatctgcatcagctgcgcggccgtgtc
ggacggggccatatcgaggggtatgcctattttattgtcgatgacaaagagaacctcacc
gaagaggcgaaaaaacgtcttgtggcactcgaatcgaactcctttttgggaagcggatcg
atgttggcgtaccacgacctcgaaatccgcggcggggggaatctcgtcggggatgctcag
agcggtcacatcaaaaatatcgggtatgccctttacttgcggatgttggaagatgcgatc
aagctccttaccaaccaaacgacggcggtgcgggcaaaagtcgatatcaagctcaccgtc
agcgcctttatcagcgatgagatcgttaccgaagaccgccttcgacttgaactctaccgc
cgcctgagccagtgcgaaagtccgagcgagatatacgagatcgaagaagaggtcggggat
cggttcggcaaacccgatactcctacgaaacagtttttcgagatcatggtgatcaaactg
ctctgtatcgagaagaagatcaaaatggtgagcaactacaaccaaaacatcaccatagag
taccaaagtggcatcaaagagacgcttcagagcaaaagcaaagacgatgatgatcttatc
ggtacggtattgcactatcttcgcacgacgaaacaaaaagggctgtaa
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