Streptomyces koyangensis: D0C37_11910
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Entry
D0C37_11910 CDS
T06436
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sky
Streptomyces koyangensis
Pathway
sky03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sky00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D0C37_11910 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sky03400
]
D0C37_11910 (mfd)
Enzymes [BR:
sky01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D0C37_11910 (mfd)
DNA repair and recombination proteins [BR:
sky03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
D0C37_11910 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
MFD_D3
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AXQ55238
UniProt:
A0A385DA35
LinkDB
All DBs
Position
complement(2811165..2814698)
Genome browser
AA seq
1177 aa
AA seq
DB search
MSLHGLLDAVTEDPALTQALKAAGDGHLLTADLVGPPAARPFTVAALARETGRTVLAVTA
TGREAEDLAAALRTLLPPDGVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPDADDP
ETGPVSVVVASVRSVLQPQVKGLGDLEPVALKAGRTTDLEEVVRALAAAAYSRVELVEKR
GEFAVRGGILDVFPPTEDYPVRIEFWGDEVEEIRYFKVADQRSLEIAEHGLWAPPCRELL
LTDQVRERAAALAEDHPELGELLGKIAEGVAVEGMESLAPVLVDEMELLLDVLPEGAMAL
VCDPERVRTRAADLVATSLEFLQASWAASAEGGEAPIDVGAASLWGIADVRERARELGMM
WWSVSPFAADEETYDGDTWQLGMRAPETYRGDTARALADTKRWLGEGWRTVFVTEAHGPA
ARTVEVLGSEGVPARLDGDLGEISPSVVHVACGAIDHGFTDERLKLAVLTETDLSGQKAA
GKDGQRMPTRRRKTIDPLTLESGDYIVHEQHGVGRYIEMVQRTVQGATREYLLVEYAPAK
RGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYS
ARMAAPGHAFGQDTPWQRELEDAFPYMETPDQLSTIAEVKDDMEKTVPMDRLICGDVGYG
KTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYAQFPVNVRALSRFQSDAEAK
ATLEGLRDGSVDIVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLT
MSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYDPKQIGAAIRRELLREGQVF
YIHNRVESIDKAAARLREIVPEARIATAHGKMSEQALEQVVVDFWEKKFDVLVSTTIVES
GIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATI
AQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRAALDGG
VEEEPAPEVKIELPVDAHVPHDYAPGERLRLQAYRAIASATTEDDIRAVREELTDRYGKL
PEPVENLLLVAGLRMLARSCGVGEIVLQGNNVRFAPVELRESQQLRLNRLYPRTVIKANT
HQILVPRPTTGKIGGKPVVGRELLSWVGEFLTSILGS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggactgctcgacgcggtgaccgaggacccggcgctgacccaggcgctg
aaggcggccggggacgggcacctcctcaccgccgacctggtcggcccgcccgccgcccgg
cccttcaccgtcgccgccctcgcccgcgagacgggccgtaccgtgctcgccgtcaccgcc
accggccgcgaggccgaggacctggccgccgccctgcgcaccctgctcccgccggacggc
gtcgtggagtacccctcctgggagacgctgccgcacgagcggctctccccgcgctccgac
accgtcggccgccgcctcgccgtgctgcgccgcctcgcccacccggacgccgacgacccg
gagaccggcccggtctccgtcgtcgtcgcctccgtgcgctccgtcctccagccgcaggtc
aaggggctcggcgacctggagccggtggcgctgaaggcgggccggaccaccgacctggag
gaggtggtgcgggcgctggccgccgccgcgtactcccgggtggagctggtcgagaagcgc
ggcgagttcgccgtgcgcggcggcatcctcgacgtcttcccgccgaccgaggactacccg
gtccgcatcgagttctggggcgacgaggtcgaggagatccgctacttcaaggtcgccgac
cagcgctccctggagatcgccgagcacggtctgtgggccccgccctgccgcgaactcctc
ctcaccgaccaggtccgcgagcgggccgccgccctcgccgaggaccaccccgaactgggc
gaactcctcggcaagatcgccgagggcgtcgccgtcgagggcatggagtccctggccccc
gtcctcgtcgacgagatggaactcctcctcgacgtgctgcccgagggcgccatggccctg
gtctgcgaccccgagcgggtccgcacccgcgccgccgacctggtcgccaccagcctcgaa
ttcctccaggcatcctgggccgcctccgccgagggcggcgaggcccccatcgacgtcggc
gcggcctccctgtggggcatcgccgacgtccgcgaacgcgcccgcgagctgggcatgatg
tggtggtccgtctcgccgttcgccgccgacgaggagacctacgacggcgacacctggcag
ctggggatgcgcgcccccgagacgtaccggggcgacaccgctcgcgccctggccgacacc
aaacggtggctcggcgaggggtggcggaccgtcttcgtcaccgaggcacacggccccgcc
gcccgtaccgtcgaggtgctgggctccgagggcgtcccggcccggctcgacggcgacctc
ggcgagatcagcccctccgtggtccacgtcgcctgcggcgccatcgaccacggtttcacc
gacgagcgcctgaagctcgccgtcctcaccgagaccgacctctccggccagaaggcggcc
ggcaaggacggccagcggatgcccacccggcgccgcaagaccatcgacccgctcaccctg
gagtccggcgactacatcgtccacgagcagcacggcgtgggccgctacatcgagatggtc
cagcgcaccgtccagggcgccacccgcgagtacctcctcgtcgagtacgcccccgccaag
cgcggccagcccggcgaccgcctctacatccccaccgaccagctggaacaggtcaccaag
tacgtcggcggcgaggcccccaccctgcaccggctcggcggcgccgactggaccaagacc
aaggcgcgcgccaagaaggccgtcaaggagatcgccgccgacctcatcaagctctactcg
gcccggatggccgcccccggccacgccttcggccaggacaccccctggcagcgcgaactg
gaggacgccttcccgtacatggagacgcccgaccagctctccaccatcgccgaggtcaag
gacgacatggagaagacggtcccgatggaccgcctgatctgcggcgacgtcggttacggc
aagaccgagatcgcggtccgcgccgccttcaaggccgtccaggacggcaagcaggtcgcc
gtcctcgtccccaccaccctcctggtgcagcagcacttcggcaccttctccgagcggtac
gcgcagttcccggtgaacgtccgcgccctctcccgcttccagtccgacgccgaggccaag
gccaccctggaggggctgcgggacggctccgtcgacatcgtcatcggcacccaccgcctc
ttctcctccgagaccaagttcaaggacctgggcctggtcatcgtcgacgaggagcagcgg
ttcggcgtcgagcacaaggagcagctgaagaagctccgcgccaacgtcgacgtgctgacg
atgtccgccacccccatcccgcgcaccctggagatggcggtcaccggcatccgcgagatg
tcgacgatcaccaccccgcccgaggagcgccacccggtcctcaccttcgtcggcccctac
gacccgaagcagatcggcgccgccatccgccgcgaactcctgcgcgagggccaggtcttc
tacatccacaaccgggtcgagtccatcgacaaggccgccgcccggctgcgcgagatcgtc
cccgaggcgcggatcgccaccgcccacggcaagatgtccgaacaggccctggaacaggtc
gtcgtggacttctgggagaagaagttcgacgtcctggtctccaccacgatcgtcgagtcc
ggcatcgacatctccaacgccaacaccctcatcgtcgagcgcggcgacaacttcggcctc
tcccagctccaccagctccgcggccgcgtcggccggggccgcgaacgcgggtacgcctac
ttcctctacccgcccgagaagcccctgaccgagaccgcccacgagcgcctcgccaccatc
gcccagcacaccgagatgggcgccggcatgtacgtcgccatgaaggacctggagatccgc
ggcgccggcaacctcctcggcggcgagcagtccggccacatcgccggcgtcggcttcgac
ctgtacgtccgcatggtcggcgaggccgtcgccgactaccgcgccgccctcgacggcggc
gtcgaggaggaaccggcccccgaggtcaagatcgaactccccgtcgacgcccacgtcccg
cacgactacgcccccggcgagcgcctccgcctccaggcgtaccgcgccatcgcctccgcc
accaccgaggacgacatccgcgccgtccgcgaggaactcaccgaccgctacggcaaactc
cccgagcccgtcgagaacctcctcctcgtcgccggcctccgcatgctcgcccgctcctgc
ggcgtcggcgaaatcgtcctccagggcaacaacgtccgcttcgcccccgtcgaactccgc
gaatcccagcaactccgcctcaaccgcctctacccccgcacggtcatcaaggccaacacc
caccagatcctggtcccgcgcccgacgaccgggaagatcggggggaagcctgtggtgggg
cgggagctgctgtcgtgggtgggggagttcctgacgtcgattctggggtcgtag
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