Serpula lacrymans: SERLADRAFT_413254
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Entry
SERLADRAFT_413254 CDS
T03135
Name
(RefSeq) hypothetical protein
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
sla
Serpula lacrymans
Brite
KEGG Orthology (KO) [BR:
sla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sla03019
]
SERLADRAFT_413254
Enzymes [BR:
sla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SERLADRAFT_413254
Messenger RNA biogenesis [BR:
sla03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
SERLADRAFT_413254
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
ResIII
Helicase_C
Motif
Other DBs
NCBI-GeneID:
18813142
NCBI-ProteinID:
XP_007314259
JGI:
413254
UniProt:
F8NJG7
LinkDB
All DBs
Position
Unknown
AA seq
1750 aa
AA seq
DB search
MDLEEFDKFAEELRSSDDVQSKSLSAEQALKHVDSQWYVDTSRRARWMDLLGDYAGSEPF
VIDGESLLQLVLDDPLLAIARQNEPSFQILHAIHSLERILNDFTTRSAVFDIVFWEGSSQ
FVFASRTLARRLLFKHLHKLEFRVHTFESLSDPKWLEYCFMTKPMFVMMNDGGLLETKDI
DSLAAERILCQRVFLLDLLASGIAVTLLRGAEFRDSRISSFVYESQRESLAKGPSVSDAH
SASLKALDEAAFDARTSQTQLLCTPRSQEMITIEASLTKLAKVYLSSDSNANHELLFIFI
AHCLLLKTLTPHERARRVEAISPKLVKMLTQSFLPRAFFAAEDVITSLNPDIDVDGRVFI
ALLCFLVRNDGKQLRDLVGSVISQSVEAIWADLKLRSPNFSTLASQISSLSTKLQVSSTS
KPVKLLPFSNPVFDAELSVVHVAAEDEDESDDEDESTPSHFSLGTLFADTQHWHNHRKAI
LPKHLGGEDARPTDERQRQRKLRSDQRFMKNLQNQAGTLTGASGAALEQIKIPPVGSRVA
QPVTKQKPSQAPKVKAGKAKPLSKAEEIRKQNTDKKTQKQGADSVQWWVGRLAELGKLSV
STQAQNVQTLYRNPRSREPALAAEIRLYQIHLLLSLWIDEQGRESATTRDKYTVAIMRIV
KEAIEIGHATSEVVKCLTSVLISLGLSDYLEAVGSSADLKDEQRLSFKFIKLLKSKTKAP
LHEFMHIQEHPITWQLRLFGEFMDRSMDSQEDKRVAFKPDAWQREVLDCVDQNVSLLVVA
PTSAGKTFISYYAMEKVLRDSDNGILVYVAPTKALVAQIAAEVYARFSKDLNGRSCWAIH
TRDYRVHDPQNCQILITVPEILATMILSPPLAKLWTPRIKRIILDEIHSIGQQEGGAVWE
QILLLAPCPIIGLSATVGSPELFNKWLQSVQETRGFKHRFIHHPHRYSHLRKFFYALQYE
PRDTFQGLDSYRSTERLRFLHPVTTLSFGTRSLPPDLSLEASDTLALYEALMSCRDVISS
DLGSLEPGRYFPSNRLLQQIDVINYEADLKAVLSTLIATSDPRDKSSPLSRVIHSLEDSR
LSSLSSDALNAKPDRLLYRRNLIRLVCDLHAQNDLPAILFSFDRTDCEIMAQDLLEALQQ
KEGRWRSTSAEHKRKMAEWENWLARAKDRERQAEKAKKVKKDPDAPDSMDTTERSWQSSF
DPEDPEPQFSFAGQHTSYSKSDLNDDIRGMSRWNSAPEWALQCLRRGIAVHHAGMNKRYR
TLVESLFRQGFLRVVIATGTLALGINAPAKTSVFCGDSPFLTALMYRQCAGRAGRRGFDL
LGKVVFYGLPMDRVQRLILSKLPSLGGNFPLTSTLSLRLFNLLEGSDYAPTAVQAVQGLM
RLPHISFGSDAGRHQLLHHLRFSIDYLRRAHLLDDSGKPLNLFGIAAHLYYTEPSNLALV
SLLRNGVLHKICAQSSMINAKKDFILLMCHLFGRRYLPKTYTTDENVALLIKKSPSMVLL
PPLHKKARQVLNEHDQETLRVFVGYALTYGSQHHDKLGSDSQLPLSGPVVADNSGDDDTP
FRTYLRDTSIPVTARSLFVANSGHGDEFQTVQELARTARQGLHLNEHAIPSFSHITAISG
PSDSHFGLNAYLLDFYIHGQTAALSKANGIRRGDIWYLLQDFFLVLMTVRGVLEQLLERA
SKEAAVEDPDVDLDSGYGSFDPADTLDASEGATLSDFKRPKGVTDKDWRVYEVVNEALKE
FDEKYRAMWA
NT seq
5253 nt
NT seq
+upstream
nt +downstream
nt
atggatttagaggagtttgataaatttgctgaagaattgcgatccagcgacgatgttcaa
tcaaaatctctgtcggccgagcaggcactgaaacatgttgattcacaatggtacgtcgat
acgagtaggagagccaggtggatggatctcctgggtgattatgcaggaagtgaaccgttt
gtgattgatggtgaatcactgcttcaacttgttctggacgatcctcttcttgctatcgca
cgtcaaaatgagcctagtttccagattttacatgctatacattctctggaacgcattttg
aacgatttcacaactcgttcagctgttttcgatatcgtgttttgggaaggcagttctcag
tttgtttttgcatctcgcactcttgcgcggagactacttttcaagcatctgcataaactt
gaatttcgagtgcatacatttgaaagtctctctgacccgaagtggctcgaatattgtttc
atgaccaagcctatgtttgtcatgatgaacgatggtggactgcttgaaaccaaagacatt
gacagcctggcggcagagaggatcttatgtcagcgtgtcttcttacttgatcttctggcc
agtggcatagcagtgacacttctacgaggagcagagttccgggattcaaggatctcgtcc
ttcgtctacgaatcacagcgtgaatccttagctaaaggaccctctgtctctgatgcccat
tctgcgagccttaaagctcttgatgaagcagcattcgatgctcgcacctcccagactcaa
cttctctgtacacctagaagtcaagagatgatcactatcgaagcgagtcttactaagcta
gccaaggtctacctgtcttccgattccaacgcgaaccacgagttgctcttcatatttata
gcccattgtcttctcctgaagactttaacgccacatgagagagcccgacgtgtggaggcc
ataagccccaaactagtcaagatgttgacacagtcatttttgccacgagctttcttcgca
gctgaggacgttattactagcttgaaccctgacatcgatgtcgacggcagagtttttatt
gctcttctttgtttccttgtgcggaatgacggaaaacaactacgagatctcgtcggctct
gttatctctcaatctgtggaggcaatatgggcagatctcaaacttcgtagtcctaatttt
tctactcttgcctctcaaatctcctctctttccacaaaactgcaggtttcttcaacgtca
aagcccgtaaagctcctcccattcagcaatcctgtattcgatgccgagctgtcagtagtg
catgtagctgccgaggatgaagatgaaagcgatgacgaagacgagtctactccctcacat
ttcagtctagggacactttttgctgacacacaacactggcacaatcatcgcaaggcaatc
ctgccgaagcatctcggtggagaggatgccaggcccacggatgagaggcaacgacaacga
aagttgcgttctgaccagcgtttcatgaagaatcttcagaatcaggctggtaccctcaca
ggagcttcgggagctgccctcgagcaaatcaagattcctcccgttggctctcgtgtagcg
cagcctgttacaaaacaaaagccttctcaggccccaaaggtcaaggcaggaaaagcaaaa
ccgctctcgaaagcggaagagattcgaaaacaaaacacggataagaagacccagaaacaa
ggggctgattccgtccagtggtgggttggtcgactggcagaactcggcaaactttcggtt
tccactcaggcccaaaatgttcaaactttataccggaatcccaggagcagagaacctgct
ctcgcggcagagatccgtctatatcaaatccatctgctcctgtccttgtggattgatgaa
caaggacgagaatcagctactacacgagataaatatacagtcgctatcatgcgtattgtc
aaagaggctatcgaaatagggcatgcgacgagtgaagtagttaaatgtctgaccagcgtt
cttatctccctaggactgtccgactatcttgaagctgtaggcagctcagctgacctgaaa
gatgaacagcgtttatctttcaaattcatcaaactcctcaaatccaagacgaaagctccg
ttacatgagttcatgcatatacaggaacatcccataacctggcaattgcggctgttcgga
gagtttatggataggagtatggacagccaggaagataagcgtgtagctttcaaacctgac
gcatggcaacgtgaggtccttgactgcgttgatcagaatgtatccctactcgtcgttgct
cctactagtgcaggaaagactttcatttcctattacgctatggaaaaagtcttgagggat
tcggacaatggcatcttggtttacgttgccccaactaaagctcttgttgctcaaattgct
gctgaagtttatgctcgtttcagtaaggacttgaatggacggagctgctgggccattcat
acgcgggactatcgagtccatgaccctcaaaattgtcaaattctcataaccgtaccagaa
attttggctaccatgattctatctccgcctttggcaaaactttggacaccgcgaatcaaa
cggattattctcgatgaaattcactccattgggcaacaagaaggtggtgccgtctgggag
caaattttgctattagcaccctgtcccattattggtctctccgctactgttggttcgcct
gagctgttcaataaatggctccaatccgtacaagaaactcgcggtttcaagcacaggttt
attcaccatcctcatcgatactcgcatctgcgaaaattcttctacgcccttcaatatgag
ccccgcgacacctttcaaggtcttgattcttatcgctccaccgaacgcctcaggtttctc
catccagtcactacactttcctttggcacgcggtctctacctccggacctttccttagag
gcttcagatactctggcattatacgaagcactgatgtcctgtcgcgacgtaatatcgagt
gatttggggtctttggaacctggtcgttatttcccttccaacaggcttctgcaacaaatt
gatgtaatcaactatgaggccgatttgaaggcagtgttatcgaccttgatagcgacgtct
gacccgagagataaatcatcgcctttgtctcgcgttatccactctctggaggatagccgt
ttatcgagcctgtctagtgacgccttgaatgctaaaccagacaggttgctctaccggcgc
aatctaatcaggctggtatgcgacttgcacgcacaaaatgaccttcctgccatcctcttc
tcctttgacagaacggactgtgaaatcatggctcaggatcttttggaggcccttcaacag
aaggaaggacgatggcgttccaccagtgcggaacacaagcgcaaaatggccgagtgggaa
aattggttagctcgtgctaaagaccgcgaacggcaagcagagaaagcgaagaaagtcaag
aaagaccccgatgcccctgattctatggatacaactgagcgatcctggcaatcatctttc
gatcctgaagaccctgaaccacagttttcgtttgctggacagcacacatcctattccaag
agtgacctcaatgacgatatcagaggaatgtcgaggtggaactctgccccggagtgggcc
ctacagtgccttaggagagggatagctgttcatcatgcgggtatgaacaagcggtatagg
actctagttgagagtttgttccgacaaggtttcttgcgtgttgtgatcgcaactggcact
ttggcacttggtatcaacgcaccagcaaaaacgtcggtattttgtggagactccccattc
ttaactgctctgatgtaccgtcaatgtgctggtcgtgctggtcgccgtgggttcgatctc
ctagggaaggtagtcttctacggtcttccgatggatcgggtgcagcgtctgatactctct
aaacttccttcccttggtggtaatttccctctgacgtcgacccttagcttgcggctattc
aacttacttgagggttccgactacgcgccaactgcagtacaggccgtgcaaggcctcatg
cgattgccacacattagctttggatccgatgcaggtcgccaccaactccttcatcatttg
cgcttcagcattgactatcttcgtcgtgctcacttgctggacgatagcgggaagccactc
aacctctttgggattgctgctcatctgtattacaccgaacccagtaatcttgctcttgtc
tctctacttcgaaacggtgtgctgcacaaaatatgtgcccagtcgagcatgataaacgct
aaaaaggacttcattttgctcatgtgccacctatttggccgtcgctacttaccgaaaacg
tacaccacggacgagaatgttgctcttctcatcaaaaagtcaccatctatggtcctgctt
cctcctcttcacaagaaggctcgccaagtcttgaatgagcacgatcaagaaactctacgc
gttttcgttggttatgcgctcacatatggttctcagcatcacgacaaacttggatcggac
tcccagctacccttaagtggaccagtcgtggcagataattctggagatgatgatacacct
ttccgtacatacttgagggataccagcatccctgtcaccgctcgttcgcttttcgtagca
aactctgggcatggagatgaattccagaccgtgcaagaacttgcacgcacggctcgccaa
ggccttcatcttaacgagcatgctatcccctcattcagtcatatcacggccatttctgga
ccatcggacagccactttggtctaaacgcctacttactcgacttttacatccacgggcag
actgctgctctcagcaaggcaaatggtatcagacgaggcgatatatggtatctcttacaa
gacttcttccttgtgctgatgactgttcgaggagtgctcgagcaactcttggagcgtgcg
tcgaaggaagcagctgtggaggaccctgatgtcgaccttgatagcggttacggatcgttt
gaccccgctgatacactagatgcgagtgaaggagccaccctatccgatttcaagaggcca
aaaggagtcacagacaaagattggagggtttacgaagttgtgaacgaagcactcaaggag
ttcgacgaaaaataccgtgccatgtgggcatag
DBGET
integrated database retrieval system
