Sphingorhabdus lacus: EUU25_03895
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Entry
EUU25_03895 CDS
T09898
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
slaa
Sphingorhabdus lacus
Pathway
slaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EUU25_03895 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaa03019
]
EUU25_03895 (rnr)
03016 Transfer RNA biogenesis [BR:
slaa03016
]
EUU25_03895 (rnr)
Enzymes [BR:
slaa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
EUU25_03895 (rnr)
Messenger RNA biogenesis [BR:
slaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EUU25_03895 (rnr)
Transfer RNA biogenesis [BR:
slaa03016
]
Prokaryotic type
tRNA degradation factors
EUU25_03895 (rnr)
BRITE hierarchy
Motif
Pfam:
RNB
CSD2
S1
HTH_12
RNase_II_C_S1
LexA_DNA_bind
Motif
Other DBs
NCBI-ProteinID:
QGY79829
LinkDB
All DBs
Position
complement(835458..837719)
Genome browser
AA seq
753 aa
AA seq
DB search
MTKKHPVGLPNREQILQFIQTSNEPAGKREIAREFGLRGNEKIALKALLKDMTDEGLIDM
APGRAFHKMGGVPKVTVLKIVGIDGNQPVAVPEHWEAEGIPIPKIRVVEAKGKRGALGIG
DRILARTEERGNGWTAHVMKKLAKGSEQILGVVEGGDNGRFWLKSVDKKARFDTPIGDVG
DAKAGDLVLAELTGNAQRKSARVTQVLGDPFAPKSFSLIAIHKYGIPFEMPENAEVEAAL
VSRLPVTADHREDLRHLPIIAIDPRDARDFDDAIWAAPNAETGGFDAIVAIADVSYYVRP
GSALDREAVKRGNSVYFPDLVVPMLPHALSSDKCSLRAGEDRAVIACHLAIGKSGQVTSW
RFARAVARISANIPYPDAQAAIDGKMESPLLETALKPLWACWRLLARARSKRAPLELNLP
EKRITLDEQGRVTGVAEREQLEAHRLVEDFMIAANVAAAKALEAKKSPLIYRAHEPPSRE
KLVALKEYLQTFDIDFALGQVIKPETFNTILSKVIDEEIRPQIMEAVLRSQTQAYYGPTN
VGHFGLSLGSYAHFTSPIRRYADLIVHRALVSAYGLEMPKPKLNDVEPMTGLTEVAVAKL
AATAEAISRTERRAMEAERETTDRYIAVYLSAHVGEIVQARITGVQNFGFFATVEGVGGD
GLVPVSTLGKDYFHYDEASQTLIGEKTRQEFRPGMRLELRLAEANPVSGSLRFELPDGAT
YPSDRPKHKHKAGKFDVGKRGRPKNIRHQGKRR
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaaaaacaccctgttggtctccctaaccgcgaacaaattctccagtttatccag
acgtccaatgaacccgccggaaagcgcgaaattgcgcgtgaattcgggttgcgtgggaat
gagaagatagcgctcaaggcactgctgaaagatatgaccgatgaggggctgatcgacatg
gctcccggtcgcgcatttcataagatgggcggcgttcccaaggttacggttctcaaaatc
gtcggcattgatggcaaccagcctgttgctgttcccgaacattgggaagcggaaggcatc
ccgatccccaaaatccgtgttgtagaggccaagggaaagcgcggggcgcttggaataggc
gaccgtatcctggcccgcaccgaagagcgcggcaatggctggacggcgcatgtcatgaaa
aagctcgccaagggaagcgagcagatattgggcgtggtcgaaggcggcgacaatggacgc
ttctggctgaaatccgtcgacaagaaggcgcgtttcgacacgcccattggtgacgtaggc
gacgcaaaggcaggcgatctggtcttggcggaactaaccggcaacgcacaacgcaagtcg
gcgcgggtgacccaagtgctcggtgatccttttgcgccgaaaagcttcagcctgattgcg
atccacaaatatggcattccttttgaaatgccggaaaatgcggaagtggaggccgctttg
gtcagccgcttgccggtcactgccgaccatcgcgaagatttgcggcatttgccgatcatt
gcgatcgacccacgcgatgcccgtgatttcgatgatgccatttgggcagcgcccaatgcg
gagacgggtggctttgatgcgatcgtcgccattgccgatgtcagctattatgtccgccct
ggcagcgcgctcgaccgcgaagccgtgaagcgcggcaatagtgtttacttcccggacctc
gtggtcccgatgctcccccacgccttgtcctccgacaaatgctctttgcgcgctggcgag
gatcgggcggtcattgcctgccatctggcgatcggcaagtccggacaagtgacgtcatgg
cgtttcgcccgcgctgtggcccggatttccgccaatattccctatcccgacgcgcaggct
gcgattgacggaaagatggaaagtcccctgctggagaccgcgctcaagccgctttgggcg
tgctggcggttgctggcgcgggcaaggagcaagcgcgcgccgctggaactgaacttgcca
gaaaagcggatcacattggacgagcaggggcgtgtcacgggcgttgcggagcgtgaacaa
ctggaagcacaccggctggtcgaggatttcatgattgccgcaaatgtcgcggctgcaaaa
gccctggaggcaaagaaatcgccgctcatctaccgcgcgcacgaaccaccgagccgagaa
aagctggtcgctctgaaggaatatctgcagaccttcgacattgatttcgcgttgggccaa
gtcatcaagcccgagacattcaatacgatcctgagcaaggtcattgacgaagaaatccgt
ccgcaaatcatggaagctgtgcttaggagccagacccaggcttattatggccccacaaat
gtcggccatttcggactatcgctgggcagttacgcccactttacctcgcccattcgtcgc
tatgccgacctgatcgtccaccgcgcacttgtcagcgcctatggcctggaaatgccgaag
ccgaagctgaatgatgtggagccgatgactggcctgaccgaggttgctgtcgcaaagctc
gccgccacggccgaagcaatcagccgcaccgaacgccgcgccatggaagcggagcgcgag
acgaccgaccgctacatcgccgtctatctgtcggcgcatgtcggagaaatcgtgcaagcg
cgcattactggcgtgcagaatttcggatttttcgctacagttgaaggggttggcggcgat
ggcttggtgcctgtgtcaactctcgggaaagactatttccattatgacgaagcaagccag
acgctgatcggcgaaaagacgcggcaggaattccggcctggtatgcggctcgaactcagg
ttggcagaggccaatcccgtgtcggggtcgttgcgcttcgaattacccgatggcgcaaca
tatccatcagaccggccaaagcataagcataaggcgggcaagtttgacgtcggcaagcgc
gggcgaccgaaaaatatccggcatcagggaaaacgacgctaa
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