Sulfurimicrobium lacus skT11: SKTS_35290
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Entry
SKTS_35290 CDS
T06796
Symbol
xth-1
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
slac
Sulfurimicrobium lacus skT11
Pathway
slac03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
slac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SKTS_35290 (xth-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slac03400
]
SKTS_35290 (xth-1)
Enzymes [BR:
slac01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
SKTS_35290 (xth-1)
DNA repair and recombination proteins [BR:
slac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
SKTS_35290 (xth-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Motif
Other DBs
NCBI-ProteinID:
BCB28643
UniProt:
A0A6F8VFP3
LinkDB
All DBs
Position
complement(3656379..3657158)
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AA seq
259 aa
AA seq
DB search
MRIISVNLNGIRSAASKGFFDWLAGQDADVVCLQELKAQAADMRPEMLQPAGFHGCFHYA
EKKGYSGVGIYSRREPDRVVEGLGIADIDAEGRYLQADFGNLSVISLYLPSGSSSEERQQ
VKFYFLERFLPHLRELKASGREIILCGDWNIAHKEIDLKNWKSNQKNSGFLPEERAWLTH
VFDQVGWVDVYRRLQPEATGEAYTWWSNRGQAWAKNVGWRIDYQIATPGIAEKAAAASVY
KAERFSDHAPLLIDYDWPS
NT seq
780 nt
NT seq
+upstream
nt +downstream
nt
ttgcgcattatatctgtaaatctaaatggcatccgctccgccgccagcaaagggtttttc
gactggctggccgggcaggacgccgacgtggtgtgcctgcaggaactcaaggcccaggct
gccgatatgcgcccggaaatgctccagccggcgggcttccacggctgtttccactatgcc
gaaaagaagggctacagcggggtgggcatctactcgcggcgcgaacccgacagggtggtc
gaagggctgggcatcgccgatatcgatgccgagggacgctatcttcaggcggatttcggc
aatctgtcggtgatctcgctctacctgccctccggttccagctcggaagagcgccagcag
gtgaaattctatttcctcgaacgcttcctgccgcacctgcgcgaactcaaggcgagcggg
cgggaaatcatcctgtgcggcgactggaacatcgcccacaaggaaatcgacctcaagaac
tggaaatcgaaccagaaaaactccggtttcctgcccgaggaacgcgcctggctgacccat
gttttcgaccaggtcggctgggtcgacgtgtaccgtcgcctgcaacccgaggcgaccggc
gaagcctacacctggtggtccaaccgcgggcaggcctgggccaaaaacgtgggctggcgc
atcgactaccagatcgccacgcccggtatcgcggagaaggccgccgccgccagcgtttac
aaggcggaacgtttctccgaccacgccccgctgctaatcgattacgactggccgagctga
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