Streptomyces laculatispora: P8A22_23530
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Entry
P8A22_23530 CDS
T09657
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
slai
Streptomyces laculatispora
Pathway
slai03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
slai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
P8A22_23530 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slai03400
]
P8A22_23530 (mfd)
Enzymes [BR:
slai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
P8A22_23530 (mfd)
DNA repair and recombination proteins [BR:
slai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
P8A22_23530 (mfd)
BRITE hierarchy
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_22
4HBT_3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WLQ42649
LinkDB
All DBs
Position
5309874..5313407
Genome browser
AA seq
1177 aa
AA seq
DB search
MSLHGLLDVVVRDPALSEAVKAAGDSHRMHIDLVGPPAARPFAVAALARDAGRTVLAVTA
TGREAEDLAAALRTLLPPDTVAEFPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRQDDP
ETGPVSVVVAPVRSVLQPQVKGLADLEPVALRIGQSADLGETVEALAAAAYSRVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKIADQRSLEIADHGLWAPPCRELL
LTDQVRERAAALAEQHPELGELLNKIAEGIAVEGMESLAPVLVDDMELLIDVLPKGSMAV
VCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVGAASLRGIADVRDRARELEMM
WWSISPFAADEELDDDTLKLRMHAPEAYRGDTARALADTKGWLADGWRTVYVTEGQGLAS
RTVEVLGGEGIPARLDADLAEISPSLVHVSCGAIDHGFVDPQLKLAVLTETDLTGQRTAI
KDLGRMPARRRKSIDPLTLETGDYIVHEQHGVGRYIEMVQRTVQGATREYLLVEYAPAKR
GQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYAA
RMAAPGHVFGPDTPWQRELEDAFPHAETPDQLTTIAEVKEDMEKSVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHYGTFTERYSQFPVNVRALSRFQSESQSKS
TLEGLREGSVDLVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAIRRELLREGQAFY
IHNRVESIDRAAARLREIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDNFGLSQLHQLRGRVGRGRDRGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYIRMVGEAVAGYRTSLEGGA
EEEEPPLEVKIELPVDAHIPHDYAPGERLRLQAYRSIASASSEDDIKAVREELTDRYGKL
PEPVENLLLVAGLRMLARACGVGEIVLQGQNIRFAPVELRESQELRLKRLHPKTIIKPAL
HQILVPRPTAGRIGGKPVVGRELLAWTGEFLTTILGS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctggatgtcgtcgtacgtgacccggcgctgtccgaagcggtg
aaggccgccggagacagccaccggatgcacatcgacctggtgggcccgcccgccgccagg
cccttcgccgtggccgcgctggccagggacgccgggcggaccgtgctcgccgtcaccgcg
accggacgcgaggccgaggacctggcggcggcgctgcgcacgctgctgccgccggacacg
gtcgcggagttcccgtcctgggagacgctgccgcacgagcggctctcgccccgctccgac
accgtgggccgccggctggccgtgctgcggcgcctcgcgcacccgaggcaggacgacccg
gagaccgggccggtctccgtcgtcgtcgcgccggtgcgctccgtgctccagccgcaggtc
aaggggctcgccgacctggagccggtggcgctgcggatcgggcagagcgccgatctcggc
gagacggtcgaggcgctcgcggccgccgcgtactcccgggtcgagctggtcgagaagcgc
ggtgagttcgcggtgcgcggcggcatcctggacgtcttcccgccgaccgaggagcacccc
cttcgggtggagttctggggcgacgacgtcgaggagatccgctacttcaagatcgccgac
cagcggtcgctggagatcgccgaccacgggctgtgggcgccgccctgccgcgagctgctg
ctgaccgaccaggtccgcgagcgggccgccgcgctcgcggaacaacaccccgagctgggc
gaactcctcaacaagatcgccgagggcatcgcggtggagggcatggagtccctggcaccg
gttctcgtcgatgacatggagctgctgatcgacgtgctgcccaagggctcgatggccgtg
gtctgcgacccggagcgggtccgcacccgggccgccgacctggtcgccaccagccaggag
ttcctccaggcgtcgtgggcggccaccgcgggcggcggcgaggccccgatcgacgtcggc
gcggcctcgctgcgcggcatcgcggacgtccgcgaccgggcccgtgagctggagatgatg
tggtggtcgatctccccgttcgccgcggacgaggagctggacgacgacaccctcaagctc
cggatgcacgccccggaggcgtaccggggcgacaccgcccgcgcgctcgccgacaccaag
ggctggctggccgacggctggcgcacggtgtacgtcaccgagggccagggcctcgcctcc
cgtaccgtcgaggtgctgggcggcgagggcatcccggcccgtctcgacgcggatctggcg
gagatctcgccgtccctggtccatgtctcctgcggcgcgatcgaccacggcttcgtcgac
ccgcagctcaagctcgccgtccttaccgagacggacctgaccggtcagcgcaccgccatc
aaggacctgggccggatgccggcccgccgccgcaagagcatcgacccgctgacgctggag
acgggcgactacatcgtccacgagcagcacggcgtgggccgctacatcgagatggtgcag
cgcacggtgcagggcgccacccgcgagtacctcctcgtcgagtacgcccccgccaagcgc
ggccagcccggcgaccggctctacatcccgaccgaccagctggagcaggtcaccaagtac
gtcggcggcgaggcgcccaccctgcaccggctcggcggcgccgactggaccaagacgaag
gcacgcgccaagaaggccgtcaaggagatcgccgccgacctgatcaagctctacgcggcc
cggatggcggcccccggtcatgtcttcggcccggacaccccctggcagcgcgaactggag
gacgccttcccgcacgcggagacgcccgaccagctcaccaccatcgccgaggtcaaggag
gacatggagaagtccgtacccatggaccggctgatctgcggcgacgtcggctacggcaag
acggagatcgcggtgcgcgcggccttcaaggcggtccaggacggcaagcaggtcgccgtc
ctcgtccccacgaccctcctggtccagcagcactacggcacgttcaccgagcggtactcc
cagttccccgtcaacgtacgggcgctgagccgcttccagtccgagtcccagtccaagtcg
acgctcgaagggctgcgcgaaggctccgtcgacctggtcatcggcacccaccgcctcttc
tcctccgagacgaagttcaaggacctgggcctggtcatcgtcgacgaggaacagcgcttc
ggcgtcgagcacaaggagcagctgaagaagctccgcgccaacgtggacgtcctcaccatg
tccgcgacacccattccccgtacgctcgaaatggcggtgaccggcatccgcgagatgtcg
acgatcaccacaccgcccgaggagcgccacccggtcctcaccttcgtcggcccgtacgag
gagaagcagatcggcgcggccatccgccgcgaactgctccgcgagggccaggcgttctac
atccacaaccgcgtcgagtccatcgaccgggccgccgcccggctgcgcgagatcgtcccc
gaggcgcggatcgccaccgcgcacggccagatgtccgaacaggccctggaacaggtggtg
gtggacttctgggagaagaagttcgacgtcctggtctccacgacgatcgtcgagtccggc
atcgacatctccaacgccaacaccctgatcgtggagcgcggcgacaacttcggcctctcc
cagctccaccagctgcgcggccgggtgggccgtggccgcgaccgcggctacgcctacttc
ctctacccgccggagaagccgctcaccgagacggcccacgagcggctcgccacgatcgcc
cagcacaccgagatgggcgcgggcatgtacgtggccatgaaggacctggagatccgcggc
gccggaaacctcctgggcggcgaacagtccgggcacatcgcgggcgtcggtttcgacctg
tacatccgcatggtcggcgaagcggtcgccggctaccggacctcgctggaaggcggcgcc
gaggaggaggagccgccgctggaggtcaagatcgagctgccggtcgacgcgcacatcccg
cacgactacgcccccggcgagcgcctccgcctccaggcgtaccgctcgatcgcctcggcc
tcctccgaggacgacatcaaggccgtccgcgaggagctcaccgaccgctacggaaagctt
ccggaaccggtcgagaacctcctcctggtggccggcctgcgcatgctcgcccgcgcctgc
ggcgtcggcgagatcgtgctccaggggcagaacatccggttcgccccggtggagttgcgc
gagtcgcaggagctccgcctgaagcgcctgcacccgaagacgatcatcaagccggccctc
caccagatcctggtcccgcgcccgacggccggcaggatcggcggcaagccggtcgtgggc
cgcgaactcctggcgtggacgggggagttcctgacgacgatcctggggtcgtag
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integrated database retrieval system
