Seriola lalandi dorsalis (Yellowtail amberjack): 111653277
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Entry
111653277 CDS
T06058
Symbol
thoc1
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal03013
Nucleocytoplasmic transport
slal03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111653277 (thoc1)
09122 Translation
03013 Nucleocytoplasmic transport
111653277 (thoc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slal03019
]
111653277 (thoc1)
03041 Spliceosome [BR:
slal03041
]
111653277 (thoc1)
Messenger RNA biogenesis [BR:
slal03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
111653277 (thoc1)
Spliceosome [BR:
slal03041
]
Complex C
Other components
EJC/TREX
111653277 (thoc1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
111653277 (thoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
efThoc1
Death
Motif
Other DBs
NCBI-GeneID:
111653277
NCBI-ProteinID:
XP_023259560
Ensembl:
ENSSLDG00000015555
LinkDB
All DBs
Position
Unknown
AA seq
654 aa
AA seq
DB search
MSPSSFNFVEAKDKFTASARFALTSKTSKPLINAFNQIPGNETEKKTTLDQALRSVLGDQ
IIEHKASCDDYLSLIYLSIDAVTEGICSATTPFLLLGDVLDCLPLDQCDKIFSFVEENVS
TWKSNSFYTAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQF
NLDNITVFNKNEQESTLGQKHTEEKEEGMEVEEGEMGEDDTPAPCSIPIDYNLYRKFWTL
QDYFRNPVQCYDKFSWMTFLKFSDETLAVFKSYKLDDMQASKRKLEELRASDGEHVYFAK
FLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSSSALNDDQTTWIEETTKLV
YQLLREIPPDGDKFATMVEHILNTEENWNVWKNEGCPSFVKERTVDDKPKRPTRKRQAPE
DFLGKGPDRKIFMGNDELTRLWNLNQDNMEACKSDSREFMPSLDEFFAEAIEQADPANMV
EEEYKVVRNPNYGWRALRLLSRRSPHFFQPTNQKFKSLADYLDSMVSKLAKELPKDIPSE
EIKTGEEDDDDNGDNLLKDSNDSPSIQSKLVTNQQMDDIAAKLGAQWKMLASHLEMKAAE
LREIETDSEDVDMQAKLLLVAWQDREGTQATVESLITALNAAGFSQIADGLNEA
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgtcctcatttaattttgtcgaggctaaagacaaatttacggcttctgccaga
tttgccctaacaagtaaaaccagcaaacctttgataaacgctttcaatcagatccccggc
aatgaaacggaaaagaaaaccacacttgaccaggctctgaggagtgttcttggcgatcag
attattgagcataaggcaagctgtgatgactacctgtctctgatctacctgagtattgac
gccgttacagagggtatctgctctgctaccacacctttccttctgttgggagatgtactg
gactgccttcctcttgaccagtgtgacaaaatattctcttttgtcgaggagaatgtctcc
acatggaagtcgaactccttttacactgctgggaagaactacttgttgaggatgtgtaat
gaccttttgaggaggctgtccaaatctcagaatacagtgttctgtgggcgaatccagctt
ttcctggcacgcctgttccctttgtctgagaaatcaggtctcaatctacagagccagttt
aatctggacaatataacagtgttcaataaaaatgaacaagaaagtactctcggccagaag
cacacagaagaaaaggaagaaggtatggaggtggaagaaggagaaatgggggaggatgat
actcctgcaccatgctccattccgattgactacaacttgtacaggaagttctggacactg
caggactacttcagaaaccctgtgcagtgctacgataaattctcttggatgacattcctt
aagttctcagatgagacgctggcagtattcaagagctacaagctggatgacatgcaggcc
tctaagaggaaactggaggagcttagagcatctgacggagaacatgtctactttgctaag
ttcctcacaagtgagaagctgatggatttgcagctcagtgacagcaatttcaggcgacac
attctacttcagtacctcattctcttccagtacttgaagggtcaggtcaagttcaaaagc
tccagctctgctctgaatgatgaccagactacatggatagaggagacaactaaactggtt
tatcagctgctgagagaaatccctcctgatggagacaagtttgccaccatggttgagcat
atcctcaacacagaggagaactggaatgtctggaaaaatgagggatgcccaagctttgtg
aaagaaaggacggtagatgacaaacccaaaagaccgaccaggaaaagacaagcaccagaa
gacttcctgggaaaagggccggaccgcaagatcttcatgggaaatgatgagctgactcgg
ctgtggaacctgaaccaggacaacatggaagcctgcaagtcagacagcagagagttcatg
ccatcattggatgaattctttgcagaagccatagaacaggccgaccctgctaacatggtg
gaggaagagtacaaggttgtacggaacccaaactatggctggcgcgctctgaggctgctg
tccaggagaagtccacacttctttcaaccaactaaccagaagttcaagagcctggcagac
tatctagatagcatggtcagcaaactggcaaaagaactgccgaaggatatcccttctgaa
gagatcaagacaggagaagaggatgatgacgataatggagacaatcttctcaaagacagc
aatgacagtccgagcatacagagcaagctggtgacaaaccagcagatggatgacattgca
gccaaactgggcgctcagtggaagatgctggcttctcatttggaaatgaaggcggcagag
ttgcgagagatcgaaacagatagtgaagatgttgacatgcaggccaaactgctgcttgta
gcctggcaggacagagagggaacacaagccactgtggagagcctgatcacagctcttaat
gctgcaggattctctcagattgcagatggcctcaatgaggcttag
DBGET
integrated database retrieval system
