Seriola lalandi dorsalis (Yellowtail amberjack): 111656069
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Entry
111656069 CDS
T06058
Symbol
prkn
Name
(RefSeq) E3 ubiquitin-protein ligase parkin isoform X1
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal04120
Ubiquitin mediated proteolysis
slal04137
Mitophagy - animal
slal04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
111656069 (prkn)
04120 Ubiquitin mediated proteolysis
111656069 (prkn)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
111656069 (prkn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
slal04131
]
111656069 (prkn)
04121 Ubiquitin system [BR:
slal04121
]
111656069 (prkn)
03029 Mitochondrial biogenesis [BR:
slal03029
]
111656069 (prkn)
Enzymes [BR:
slal01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
111656069 (prkn)
Membrane trafficking [BR:
slal04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
111656069 (prkn)
Aggrephagy
Other aggrephagy associated proteins
111656069 (prkn)
Xenophagy
Other xenophagy associated proteins
111656069 (prkn)
Ubiquitin system [BR:
slal04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
111656069 (prkn)
Mitochondrial biogenesis [BR:
slal03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
111656069 (prkn)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
ubiquitin
IBR
Rad60-SLD
TBK1_ULD
Rad60-SLD_2
Motif
Other DBs
NCBI-GeneID:
111656069
NCBI-ProteinID:
XP_023263405
Ensembl:
ENSSLDG00000001325
LinkDB
All DBs
Position
Unknown
AA seq
463 aa
AA seq
DB search
MIVYVRYNLGPGVAVELQEEESVAKLKEVVGSQQGVRPEELRVLFAGRELQSNATLQGCD
LPEQSTVHVVLPPSGSSSRLLLLQERLSRGSEEERDTLTRLDLSSSRLPSTSTGLAVILE
GSEREGGGDGGAEEAQAAGLRGVRTCSTFFVYCKSCSSVEPGKLRVRCRCCKQTTLTLSR
GPSCWDDVLLPGRIHGVCQSDGCHGNEAEFFMKCASHPTSDDDLSVALDLIMTNTRDVPC
IACTDVMDVVLVFQCSERHVICLDCFRRFCQTRLNERQFVHDAVVGYSLPCAVGCVDSLI
KELHHFRVLGDEQYGRYLQYGAEECLLRIGGLMCPSPGCGAGLLPPDGSRRVECERQVGC
GFVFCRDCREGYHEGACQTQPVPPASEASQGFVVGEEASLRGRWDQASQLLIQESTKRCP
KCSVPVERNGGCMHMQCPLCRAEWCWLCGVSWNRECMGNHWFG
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgatcgtgtatgtgcggtacaacctgggcccaggtgtggccgtggagctgcaggaggag
gagagcgtagccaagctgaaggaggtggtggggagtcagcagggagtccgaccggaggag
ctcagggtgttgttcgctgggagggagctgcagagcaacgccacactacagggttgtgac
ctcccggagcagagcaccgtccatgtcgtcctccctccttcagggtcgtcctcccggctg
ctcctcctgcaggagcgtctgtctcggggcagcgaggaggagcgggacaccctgaccagg
ctggacctgagctcctcgcgcctcccctccacctccactgggctggccgtgatcctggaa
gggagtgagagagagggaggaggtgacgggggagcagaggaggcgcaggctgcaggtctg
agaggtgtgcgtacctgcagtactttctttgtgtactgtaaaagctgcagctcggtcgaa
ccaggaaaactgagagttcgctgcagatgctgcaaacagacgacgctgacgctcagcagg
ggcccgtcctgttgggatgacgtcctcctcccaggtcgtatccatggcgtatgtcaatca
gacggttgtcatggcaacgaagcggagttctttatgaagtgtgcgtctcacccgacctca
gatgacgacctctctgtggcccttgacctcatcatgaccaacaccagagacgtgccctgc
atcgcctgcaccgacgtcatggacgtggtcctggtcttccagtgctcggagcgtcatgtg
atctgtctggactgtttccgtcggttctgtcagactcgactgaacgagcgacagtttgtt
cacgacgccgtggtcggatactctctgccctgcgccgtcggttgtgtggactctctgatt
aaggagctccatcatttccgggtcctgggcgacgagcagtacggtcggtacctgcagtac
ggggccgaggagtgcctgttgaggattggaggactgatgtgtccgtcacctggctgtggg
gcggggcttctccctcctgacggcagcaggagggtggagtgtgaacgacaggtgggctgc
ggcttcgtcttctgcagagattgcagggagggctaccacgagggggcgtgtcagacgcag
cccgtcccgcctgcaagcgaagcctcacagggttttgtggtgggggaggaggcgtctctc
agagggaggtgggatcaagcgtctcagctcctgatccaggagtcgactaaacgctgccct
aagtgttcagttcctgtggagagaaacggcggctgcatgcacatgcagtgtcctctgtgc
agagcagagtggtgctggctctgtggagtctcctggaacagggagtgtatgggaaaccac
tggttcggataa
DBGET
integrated database retrieval system
