Seriola lalandi dorsalis (Yellowtail amberjack): 111668444
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Entry
111668444 CDS
T06058
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal03030
DNA replication
slal03410
Base excision repair
slal03420
Nucleotide excision repair
slal03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
111668444 (lig1)
03410 Base excision repair
111668444 (lig1)
03420 Nucleotide excision repair
111668444 (lig1)
03430 Mismatch repair
111668444 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slal03032
]
111668444 (lig1)
03400 DNA repair and recombination proteins [BR:
slal03400
]
111668444 (lig1)
Enzymes [BR:
slal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
111668444 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
111668444 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
111668444 (lig1)
DNA replication proteins [BR:
slal03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
111668444 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
111668444 (lig1)
DNA repair and recombination proteins [BR:
slal03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
111668444 (lig1)
NER (nucleotide excision repair)
Other NER factors
111668444 (lig1)
MMR (mismatch excision repair)
Other MMR factors
111668444 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
111668444
NCBI-ProteinID:
XP_023280285
Ensembl:
ENSSLDG00000006550
LinkDB
All DBs
Position
Unknown
AA seq
1018 aa
AA seq
DB search
MQRSIASFFQPKSRDKDIQKKTADEPVIKPVKSPLKVQNGAVETDSPIKKVAKRSRQILD
SDDDEAPIVKEQVATKGQGDKETSSKKEKKDDVFKAVPTPMSPPPAPATPVTPATPVTPA
TPATPASSASPGTPSTPNSISPTGAIKRKTARKMFPKRKLDESRSGSESQREEAEAKEEQ
GQQNKRPRVETSASSAGNTGEPMEEGAKEEGVEKAVTEANSPDEEVENKKKEEGEEAMEE
EQVEKKSSDEKEKKAEGAEKKNEAKEKTDDEKGLAVAKKEVVEKDTREGEKSPKSQTAKK
QKEAKEQKDKEPAKKSPISSFFAPRKAAVKTEKPEKNEGEKKTSAERKSSAEESKDTKGE
PTSGQTDYNPSRPGYHPVDHACWKQGQKVPYLAVARTFEKIEEDSGRLRNIETLSNLLRS
VLLLSPDDLLCCVYLCLNQLGPAYLGMELGVGETVLMKAVAQATGRQLDKIKAEAQEKGD
LGLVAESSRSNQRMMFQPASLTAGGVFRKLKEIASMSGNSAMNKKIDIIKGLFVACRFSE
ARYIVRSLAGKLRIGLAEQSVLSALSQAVCLTPPGQGFPPAVIDAGKGMSAESKRAWIEE
KSLILKQTYCEMPNYDVLIPVLLKEGIDQLPNHCKLTPGIPLRPMLAHPTKGVGEVMKKF
DEAAFTCEYKYDGERAQIHILESGEVRIFSRNQEDNTSKYPDIISRIPKVKKDSVVSCVL
DTEAVAWDREKKQIQPFQVLTTRKRKDVDATEIKVQVCVYAFDLLYLNGESLVRQPLSRR
RALLKESFSEVEGEFMFARSIDSDNTDAIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKR
SHNWLKLKKDYLEGVGDTVDLCVIGAYMGKGKRTGTYGGFLLACYDDENEEFQSICKIGT
GFKDEDLEQHYKFLKDHILPKPRAYYRVDQSAEPDMWLDAVQVWEVKCADLSLSPIYKAA
MGMVDPEKGISLRFPRFLRIRDDKKPEDATTGAQIADLYKKQQQIQNQGEKADPEDYY
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgcagcatcgcctccttcttccagcccaagagcagagacaaggatattcagaag
aaaactgcagatgagccagtgataaaacctgtcaagagtcctctcaaggtgcagaatggt
gccgttgaaactgattcacctatcaagaaggttgccaagcgcagccgtcaaatcctggac
agcgacgacgacgaggcaccaatagttaaagagcaagttgccaccaaaggacaaggagac
aaagaaacctccagtaaaaaagaaaagaaggatgatgtgtttaaggcagttcccaccccc
atgtctccaccaccagctccagccactcctgtaacaccagccactcctgtaacaccggcc
actccagccaccccggcctcctcagcctcaccagggactcccagcacccctaactccatc
tccccgactggggccattaaacgcaagactgcgaggaagatgttccccaagaggaagctt
gatgagagcaggagcggcagcgagagtcagagagaggaggccgaggccaaagaggagcag
ggtcagcaaaataaacgaccccgtgtggagaccagtgccagcagtgcagggaacaccggt
gaacccatggaggagggagcaaaggaagaaggagttgaaaaggcagtgaccgaggctaac
agcccagatgaggaggtggagaacaagaagaaagaagaaggagaggaggccatggaggag
gagcaggtggagaaaaagagctctgatgagaaagaaaagaaagctgagggggcggaaaag
aaaaatgaagcaaaggagaagacagatgatgagaaagggcttgccgttgccaagaaggag
gtggttgaaaaggacacacgagagggagaaaagagcccaaaaagtcaaacagcgaaaaaa
cagaaagaagcaaaagagcagaaagataaggagccagccaagaaatcccccatcagcagt
ttctttgctcccagaaaagctgcagtgaagacggagaaaccagagaagaatgaaggggag
aaaaagacaagtgcggagaggaagagttcagcggaggagagtaaagacacaaaaggcgag
ccaacttcaggacaaacagactacaatccgtcccggccaggatatcatcccgtggaccac
gcctgctggaagcagggccaaaaagtgccgtacttggcggtggctcgcacttttgagaag
attgaagaggactctggcaggctgagaaacattgagacgctgtcgaacctgcttcgctct
gtgctgctgctctctccagacgacctgctgtgctgtgtgtacctgtgtttgaaccagctg
ggtcctgcatacctggggatggagcttggcgttggagagacggtgctgatgaaagctgtt
gctcaagctactgggcgacaattggacaaaatcaaagcagaggctcaggagaaaggagat
ttgggcctagtggccgagagttcccgtagcaaccagcgcatgatgttccaaccagccagt
ctaacagcagggggcgtgttcaggaaattgaaggaaattgccagcatgagtggaaactcg
gccatgaataagaaaatcgacatcatcaaaggcctctttgtggcatgccgcttttccgag
gcccgctacatagtcaggtctcttgctgggaagctgaggataggcctggccgagcagagt
gtcctatcagcactcagccaggctgtgtgtttgaccccacctggacaaggtttccctcct
gctgtgatcgacgcagggaaagggatgagcgctgagagcaagcgggcctggatcgaagag
aagagtctcattctcaaacagacttactgcgagatgcccaattacgacgtcctcatccct
gttctgctaaaagagggcatagaccagctacccaatcactgcaagctcactccaggtata
ccgctgagacccatgttggcacaccccacaaagggtgtcggcgaggtgatgaagaagttt
gacgaggcggcgttcacctgcgagtacaagtacgacggcgagcgtgcacagattcacatt
ttggagagcggcgaggttcgaatattcagccgcaaccaggaagacaacaccagcaaatac
cccgatatcatctctcgcattcccaaggtgaagaaggactcagtggtatcctgcgtcctg
gacacagaggctgtcgcctgggatcgtgagaagaaacagatccagcccttccaggtcctc
accactcgtaagagaaaggacgtggatgccacggagatcaaagtgcaagtgtgcgtgtac
gcctttgacctcctctatctcaatggcgagtccctggtgcgacagccgttgagtcggcgt
cgggctctgctgaaagaaagcttctcagaggtggagggagagtttatgttcgcccgatcc
attgactctgacaacacagacgccatcgctgagttcctggagcagtctgtccgagattcc
tgtgagggcctgatggtgaagactctggagaaagatgccacctacgaaattgccaagcgc
tctcataactggctcaagctgaagaaagactacctggagggggtgggcgacacagtggac
ctgtgtgtgattggcgcctacatggggaaaggcaagaggacgggcacctacgggggcttc
ctgctggcgtgctatgatgatgagaacgaggagttccagtccatctgcaagatcgggaca
ggcttcaaggatgaagatctggagcagcattacaagttcttaaaggaccacattctgccg
aagccccgtgcctactaccgcgtcgaccaatcagcagagcccgacatgtggctcgacgcc
gtgcaggtttgggaagtgaagtgtgccgacctttcgctgtcgcccatctacaaggctgcc
atgggaatggtggatccagagaagggcatttctctgaggttcccccgcttccttcggatc
agagacgacaaaaaacccgaggacgctacgaccggagctcagattgcggatttgtacaag
aagcagcagcagattcagaatcagggggagaaagctgacccagaggactactactga
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integrated database retrieval system