KEGG   Seriola lalandi dorsalis (Yellowtail amberjack): 111668444
Entry
111668444         CDS       T06058                                 
Symbol
lig1
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
slal  Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal03030  DNA replication
slal03410  Base excision repair
slal03420  Nucleotide excision repair
slal03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:slal00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    111668444 (lig1)
   03410 Base excision repair
    111668444 (lig1)
   03420 Nucleotide excision repair
    111668444 (lig1)
   03430 Mismatch repair
    111668444 (lig1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:slal03032]
    111668444 (lig1)
   03400 DNA repair and recombination proteins [BR:slal03400]
    111668444 (lig1)
Enzymes [BR:slal01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     111668444 (lig1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     111668444 (lig1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     111668444 (lig1)
DNA replication proteins [BR:slal03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    111668444 (lig1)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     111668444 (lig1)
DNA repair and recombination proteins [BR:slal03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     111668444 (lig1)
   NER (nucleotide excision repair)
    Other NER factors
     111668444 (lig1)
   MMR (mismatch excision repair)
    Other MMR factors
     111668444 (lig1)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-GeneID: 111668444
NCBI-ProteinID: XP_023280285
Ensembl: ENSSLDG00000006550
LinkDB
Position
Unknown
AA seq 1018 aa
MQRSIASFFQPKSRDKDIQKKTADEPVIKPVKSPLKVQNGAVETDSPIKKVAKRSRQILD
SDDDEAPIVKEQVATKGQGDKETSSKKEKKDDVFKAVPTPMSPPPAPATPVTPATPVTPA
TPATPASSASPGTPSTPNSISPTGAIKRKTARKMFPKRKLDESRSGSESQREEAEAKEEQ
GQQNKRPRVETSASSAGNTGEPMEEGAKEEGVEKAVTEANSPDEEVENKKKEEGEEAMEE
EQVEKKSSDEKEKKAEGAEKKNEAKEKTDDEKGLAVAKKEVVEKDTREGEKSPKSQTAKK
QKEAKEQKDKEPAKKSPISSFFAPRKAAVKTEKPEKNEGEKKTSAERKSSAEESKDTKGE
PTSGQTDYNPSRPGYHPVDHACWKQGQKVPYLAVARTFEKIEEDSGRLRNIETLSNLLRS
VLLLSPDDLLCCVYLCLNQLGPAYLGMELGVGETVLMKAVAQATGRQLDKIKAEAQEKGD
LGLVAESSRSNQRMMFQPASLTAGGVFRKLKEIASMSGNSAMNKKIDIIKGLFVACRFSE
ARYIVRSLAGKLRIGLAEQSVLSALSQAVCLTPPGQGFPPAVIDAGKGMSAESKRAWIEE
KSLILKQTYCEMPNYDVLIPVLLKEGIDQLPNHCKLTPGIPLRPMLAHPTKGVGEVMKKF
DEAAFTCEYKYDGERAQIHILESGEVRIFSRNQEDNTSKYPDIISRIPKVKKDSVVSCVL
DTEAVAWDREKKQIQPFQVLTTRKRKDVDATEIKVQVCVYAFDLLYLNGESLVRQPLSRR
RALLKESFSEVEGEFMFARSIDSDNTDAIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKR
SHNWLKLKKDYLEGVGDTVDLCVIGAYMGKGKRTGTYGGFLLACYDDENEEFQSICKIGT
GFKDEDLEQHYKFLKDHILPKPRAYYRVDQSAEPDMWLDAVQVWEVKCADLSLSPIYKAA
MGMVDPEKGISLRFPRFLRIRDDKKPEDATTGAQIADLYKKQQQIQNQGEKADPEDYY
NT seq 3057 nt   +upstreamnt  +downstreamnt
atgcagcgcagcatcgcctccttcttccagcccaagagcagagacaaggatattcagaag
aaaactgcagatgagccagtgataaaacctgtcaagagtcctctcaaggtgcagaatggt
gccgttgaaactgattcacctatcaagaaggttgccaagcgcagccgtcaaatcctggac
agcgacgacgacgaggcaccaatagttaaagagcaagttgccaccaaaggacaaggagac
aaagaaacctccagtaaaaaagaaaagaaggatgatgtgtttaaggcagttcccaccccc
atgtctccaccaccagctccagccactcctgtaacaccagccactcctgtaacaccggcc
actccagccaccccggcctcctcagcctcaccagggactcccagcacccctaactccatc
tccccgactggggccattaaacgcaagactgcgaggaagatgttccccaagaggaagctt
gatgagagcaggagcggcagcgagagtcagagagaggaggccgaggccaaagaggagcag
ggtcagcaaaataaacgaccccgtgtggagaccagtgccagcagtgcagggaacaccggt
gaacccatggaggagggagcaaaggaagaaggagttgaaaaggcagtgaccgaggctaac
agcccagatgaggaggtggagaacaagaagaaagaagaaggagaggaggccatggaggag
gagcaggtggagaaaaagagctctgatgagaaagaaaagaaagctgagggggcggaaaag
aaaaatgaagcaaaggagaagacagatgatgagaaagggcttgccgttgccaagaaggag
gtggttgaaaaggacacacgagagggagaaaagagcccaaaaagtcaaacagcgaaaaaa
cagaaagaagcaaaagagcagaaagataaggagccagccaagaaatcccccatcagcagt
ttctttgctcccagaaaagctgcagtgaagacggagaaaccagagaagaatgaaggggag
aaaaagacaagtgcggagaggaagagttcagcggaggagagtaaagacacaaaaggcgag
ccaacttcaggacaaacagactacaatccgtcccggccaggatatcatcccgtggaccac
gcctgctggaagcagggccaaaaagtgccgtacttggcggtggctcgcacttttgagaag
attgaagaggactctggcaggctgagaaacattgagacgctgtcgaacctgcttcgctct
gtgctgctgctctctccagacgacctgctgtgctgtgtgtacctgtgtttgaaccagctg
ggtcctgcatacctggggatggagcttggcgttggagagacggtgctgatgaaagctgtt
gctcaagctactgggcgacaattggacaaaatcaaagcagaggctcaggagaaaggagat
ttgggcctagtggccgagagttcccgtagcaaccagcgcatgatgttccaaccagccagt
ctaacagcagggggcgtgttcaggaaattgaaggaaattgccagcatgagtggaaactcg
gccatgaataagaaaatcgacatcatcaaaggcctctttgtggcatgccgcttttccgag
gcccgctacatagtcaggtctcttgctgggaagctgaggataggcctggccgagcagagt
gtcctatcagcactcagccaggctgtgtgtttgaccccacctggacaaggtttccctcct
gctgtgatcgacgcagggaaagggatgagcgctgagagcaagcgggcctggatcgaagag
aagagtctcattctcaaacagacttactgcgagatgcccaattacgacgtcctcatccct
gttctgctaaaagagggcatagaccagctacccaatcactgcaagctcactccaggtata
ccgctgagacccatgttggcacaccccacaaagggtgtcggcgaggtgatgaagaagttt
gacgaggcggcgttcacctgcgagtacaagtacgacggcgagcgtgcacagattcacatt
ttggagagcggcgaggttcgaatattcagccgcaaccaggaagacaacaccagcaaatac
cccgatatcatctctcgcattcccaaggtgaagaaggactcagtggtatcctgcgtcctg
gacacagaggctgtcgcctgggatcgtgagaagaaacagatccagcccttccaggtcctc
accactcgtaagagaaaggacgtggatgccacggagatcaaagtgcaagtgtgcgtgtac
gcctttgacctcctctatctcaatggcgagtccctggtgcgacagccgttgagtcggcgt
cgggctctgctgaaagaaagcttctcagaggtggagggagagtttatgttcgcccgatcc
attgactctgacaacacagacgccatcgctgagttcctggagcagtctgtccgagattcc
tgtgagggcctgatggtgaagactctggagaaagatgccacctacgaaattgccaagcgc
tctcataactggctcaagctgaagaaagactacctggagggggtgggcgacacagtggac
ctgtgtgtgattggcgcctacatggggaaaggcaagaggacgggcacctacgggggcttc
ctgctggcgtgctatgatgatgagaacgaggagttccagtccatctgcaagatcgggaca
ggcttcaaggatgaagatctggagcagcattacaagttcttaaaggaccacattctgccg
aagccccgtgcctactaccgcgtcgaccaatcagcagagcccgacatgtggctcgacgcc
gtgcaggtttgggaagtgaagtgtgccgacctttcgctgtcgcccatctacaaggctgcc
atgggaatggtggatccagagaagggcatttctctgaggttcccccgcttccttcggatc
agagacgacaaaaaacccgaggacgctacgaccggagctcagattgcggatttgtacaag
aagcagcagcagattcagaatcagggggagaaagctgacccagaggactactactga

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