Sugiyamaella lignohabitans: AWJ20_5137
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Entry
AWJ20_5137 CDS
T05270
Symbol
SSL1
Name
(RefSeq) TFIIH/NER complex subunit SSL1
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
slb
Sugiyamaella lignohabitans
Pathway
slb03022
Basal transcription factors
slb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
slb00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
AWJ20_5137 (SSL1)
09124 Replication and repair
03420 Nucleotide excision repair
AWJ20_5137 (SSL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slb03021
]
AWJ20_5137 (SSL1)
03400 DNA repair and recombination proteins [BR:
slb03400
]
AWJ20_5137 (SSL1)
Transcription machinery [BR:
slb03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
AWJ20_5137 (SSL1)
DNA repair and recombination proteins [BR:
slb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
AWJ20_5137 (SSL1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
Motif
Other DBs
NCBI-GeneID:
30037346
NCBI-ProteinID:
XP_018736655
UniProt:
A0A167EKC1
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Position
D:complement(1631185..1632660)
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AA seq
491 aa
AA seq
DB search
MDDSDDDYVEFSPGGGDDDDLDFNDNDGISKRTRNRDPSGSTNKKGSPRKGKAVADSKLK
GTSGGYAWEDEYHRSWDVVQEDEGGSLAGAVAGLVEESKKKRIVRDTKPLQRGIIRNLIL
ILDFSSAMLEKDLRPNRYKLMINYAIEFVGEFFDQNPISQLGIVAMKDGLAMLVSELDGN
PTEHIHKLELCRKQEPTGVPSLQNALEMARGLLYHVPAHCTKEVLLIFGALLSSDPGDIH
KTITSLVDDKIRAKVIGLAAQVAVCKELSTRTNYGHSENNYGVVLNEPHFKDLLMETTTP
LAVSKMGASVRANMLVEMGFPSRISESEPTLCACHSMLTQGGYLCPRCKSKICSLPTICP
CCSLTLILSTHLARSYHHLFPLQSFIEVDATKRAIASHCFSCQLELPHITSLTSPTHRFA
CVKCNNQFCIDCDVFCHETLHNCPGCESMAHKPKQRPVPLLPRPVQKLKLNFNSASSSAS
STPAPEDGISV
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atggacgactctgacgacgactatgtcgagttttctcccggaggtggagatgatgacgat
ttagatttcaatgacaatgatggtatttctaaaagaactcggaatagagatcccagtgga
agtactaataaaaaaggttcacctagaaaaggcaaagcagttgctgacagtaaactgaag
ggaaccagtggtggttatgcttgggaagatgaatatcatcgaagttgggatgttgtacaa
gaggatgaggggggtagtttagcaggggctgttgctggtcttgttgaggaatcaaaaaag
aagagaattgttcgagatacgaaacctttgcaaagaggtatcattagaaacctgattctg
attctcgacttcagttctgccatgctggaaaaggatctacgaccgaatcgatataaacta
atgatcaattatgctattgaatttgttggagagtttttcgatcaaaatccaatttctcag
ttaggaattgtcgccatgaaggacggtttagcaatgttggtgtctgaattggatggcaac
cctacggagcatattcataaactggaactatgtcgcaaacaagagcccactggagttccc
tctttacaaaatgcattagaaatggctcgggggttgctttatcatgtccctgcacattgt
acaaaggaagttctacttatatttggtgctcttctatcgtcagatcctggagatattcac
aaaaccatcactagtttggtcgatgacaagatccgagcaaaggtcattggtctcgcagct
caggtggctgtctgtaaggagttgagtacacgaactaactacggccattctgaaaataat
tacggtgttgtgctaaatgaaccgcattttaaagatttgctgatggaaacgaccaccccg
ctagctgtatcaaaaatgggagcttcggtgcgggcaaacatgttggttgaaatggggttc
ccttcacgaatatcagaatctgaacctactctctgtgcctgtcattcaatgctgacccag
ggagggtatctatgcccgcgatgcaaatccaagatatgctcgctacccaccatttgtccc
tgctgtagtctgacccttattttatccacccatcttgctcgttcatatcaccatctcttt
ccactccaatcatttatagaagtcgatgccacgaaacgagcaatcgcttcacactgcttt
tcatgtcaacttgagctgccccatatcacctctctcacgtcacctacccaccggtttgcc
tgtgtcaagtgtaataaccaattttgcattgattgcgatgttttttgccatgaaacattg
cacaattgccctgggtgcgaatccatggcacataagcccaaacaacgccctgttcccctg
cttccccggccggttcaaaaactcaaactcaacttcaacagcgcgtcatcctcagcatct
agtactcctgcacctgaagatgggatatctgtgtag
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