Streptomyces lydicus 103: SL103_03725
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Entry
SL103_03725 CDS
T04699
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
slc
Streptomyces lydicus 103
Pathway
slc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
slc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SL103_03725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slc03400
]
SL103_03725
Enzymes [BR:
slc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SL103_03725
DNA repair and recombination proteins [BR:
slc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SL103_03725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AOP45466
UniProt:
A0A1D7VFD2
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All DBs
Position
848894..852454
Genome browser
AA seq
1186 aa
AA seq
DB search
MSLTGLLDAVVRDPALAEAVQAAADGHRRHVDLVGPPAARPFTIAALAREAKRPVLAVTA
TGREAEDLAAALRSLMPAGADNSVVEFPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRA
DDPTAGPVSVVVAPIRSVLQPQVKGLGDLEPVSLRTGGTADLEEVVDALAAAAYARVELV
EKRGEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCR
ELLLTEEVRARAAALAERHPELGELLGKIAEGIAVEGMESLAPVLVDEMELLLDVLPAGS
MAVVCDPERVRTRAADLVATSQEFLQASWAASAGGGAAPIDVGAASLWGIADVRDRAREL
GMMWWSVSQFSAGDGAADEGPAVGDGDTLKLGMHAPDTYRGDTQRALADTKQWLADGWRT
VFLTEGHGPAARTVEVLGSEGIAARLDPELPEISPSVVHVSCSSLDNGFVDPGLRLAVLT
ETDLSGQKAAGKDGARMPARRRKTIDPLTLEAGDFIVHEQHGVGRYIEMVQRTVQGATRE
YLLVEYAPAKRGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAKKAVKE
IAADLIKLYSARMAAPGHTFGPDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMD
RLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFTERYGQFPVNVRAL
SRFQTDTEAKATLEGLREGAVDIVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLK
KLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEQKQIGAAIR
RELLREGQVFYIHNRVESIDRAAARLREIVPEARIATAHGQMGEAQLEQVVVDFWEKKFD
VLVSTTIVESGIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLT
ETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAV
ADYRASLEGGVEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASATTEEDIAAVR
EELTDRYGKLPEPVENLLLVAGLRMLARSCGVSDITLQGANIRFGPVELRESQELRLKRL
YPRTVLKPATRQILVPRPTTGKIGGKPLVGRELLAWVGEFLTTVLG
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgactggtctgctcgacgccgtcgtacgggacccggcgctcgccgaagcggtg
caggccgcggccgacggacaccgccggcacgtcgatctggtcggcccgccggccgcccgc
cccttcaccatcgccgcgctcgcccgcgaggcgaagcgccccgtgctggcggtgaccgcc
accggccgggaggccgaggacctcgccgccgcgctgcgcagcctgatgccggccggcgcg
gacaactccgtcgtggagttcccgtcctgggagacgctgccgcacgagcggctctcgccg
cgctcggacaccgtcggccggcgcctcgcggtgctgcgccgactcgcccacccgcgcgcc
gacgacccgaccgccggcccggtctcggtggtcgtcgcgcccatccgttccgtgctccag
ccgcaggtcaaggggttgggagacctggagccggtcagtctgcgcacgggcgggacggcc
gatctggaggaggtcgtcgacgccctggcggcggccgcctacgcccgggtcgagctggtc
gagaagcgcggcgagttcgcggtccgcggcggcatcctggacgtgttcccgccgaccgag
gagcaccccctgcgggtggagttctggggcgacgacgtcgaggagatccgctacttcaag
gtcgccgaccagcggtcgctggaggtcgccgagcacggcctgtgggcgccgccgtgccgg
gagctgctgctgaccgaggaggtccgcgcccgggccgccgcgctcgccgagcgccacccc
gagctgggcgaactcctcggcaagatcgccgagggcatcgccgtcgaaggcatggagtcg
ctggctccggtgctggtcgacgagatggaactgctgctggacgtgctgccggcgggctcg
atggccgtggtctgcgacccggagcgggtgcgtacccgggccgccgacctggtggcgacc
agccaggagttcctgcaggcgtcctgggcggccagcgcgggcggcggagcggcgccgatc
gatgtgggcgccgcctcgctgtggggcatcgccgacgtccgcgaccgggcccgcgagctg
ggcatgatgtggtggtcggtgagccagttctccgccggtgacggtgcggcggacgagggc
cccgccgtgggggacggcgacaccctgaagctgggcatgcacgcgcccgacacctaccgc
ggcgacacccagcgcgcgctcgccgacaccaagcagtggctggccgacggctggcgcacg
gtcttcctcaccgaggggcacggccccgccgcccgtacggtcgaggtgctcggcagcgag
ggcatcgcggcccgcctggaccccgagctgcccgagatctcgccgtccgtcgtccacgtc
tcgtgcagctccctcgacaacggcttcgtcgaccccgggctccggctcgccgtgctgacc
gagaccgacctctccggccagaaggcggccggcaaggacggcgcccggatgccggcccgc
cgccgcaagaccatcgacccgctcaccctggaggcgggcgacttcatcgtccacgagcag
cacggcgtgggccgctacatcgagatggtgcagcgcaccgtccagggcgccactcgcgag
tacctcctcgtcgagtacgcccccgccaagcgcggccagcccggcgaccgcctctacatc
cccaccgaccagctggagcaggtcaccaagtacgtgggcggcgaggcaccgacgctgcac
cgcctcggcggcgccgactggaccaagaccaaggcgcgcgccaagaaggcggtcaaggag
atcgccgccgacctcatcaagctgtactcggcccggatggcggcccccggccacaccttc
ggcccggacacgccctggcagcgcgagctggaggacgccttcccgtacgcggagacgccc
gatcagctcaccaccatcgccgaggtcaaggaggacatggagaagtcggtcccgatggac
cggctgatctgcggcgacgtcggctacggcaagaccgagatcgcggtccgcgccgcgttc
aaggccgtgcaggacggcaagcaggtggccgtcctggtgcccaccaccctcctcgtccag
cagcacttcggcacgttcaccgagcgctacggccagttcccggtgaatgtccgggcgctg
tcccgcttccagaccgacaccgaggccaaggcgacgctggagggcctgcgggagggcgcc
gtcgacatcgtcatcggcacccaccgcctcttctcctccgagaccaagttcaaggacctc
ggcctggtcatcgtcgacgaggagcagcgcttcggcgtcgagcacaaggagcagctcaag
aagctccgcgccaacgtcgacgtcctcacgatgtccgccacgcccatcccgcgcaccctg
gagatggcagtcaccggcatccgcgagatgtcgacgatcaccacaccgcccgaggagcgc
cacccggtcctgaccttcgtcggcccctacgagcagaagcagatcggcgccgccatccgc
cgtgaactcctgcgcgagggccaggtcttctacatccacaaccgcgtcgagtcgatcgac
cgcgccgccgcccggctgcgcgagatcgtccccgaggcccggatcgccaccgcgcacggg
cagatgggcgaggcgcaactggagcaggtcgtcgtcgacttctgggagaagaagttcgac
gtgctggtgtcgacgaccatcgtcgagtccggcatcgacatctccaacgccaacaccctg
atcgtcgagcgcggcgacaacttcggcctctcccagctgcaccagctgcgcggacgggtc
ggccggggccgcgagcgcggctacgcctacttcctctatccgccggagaagccgctcacc
gagaccgcccacgagcggttggccaccatcgcccagcacacggagatgggcgccggtatg
tacgtcgccatgaaggacctggagatccgcggcgccggcaacctcctcggcggcgagcag
tccggccacatcgcgggcgtcggcttcgacctgtacgtccgcatggtcggcgaggcggtc
gccgactaccgcgcctccctggaaggcggcgtggaggaggaaccgcccctcgaagtcaag
atcgaactcccggtggacgcgcacgtcccgcacgactacgcgccgggcgagcggctccgc
ctccaggcgtaccgcgccatcgcctcggccacgacggaggaggacatcgccgccgtccgc
gaggaactcaccgaccgctacggcaagttgccggagccggtggagaacctcctgctggtc
gccgggctgcgcatgctcgcccgttcctgcggcgtctccgacatcaccctccagggcgcc
aacatccgcttcggccccgtggaactgcgcgagtcccaggaactccgcctcaagcggctc
tacccccgtacggtcctcaagccggccacccggcagatcctggtcccccgccccacgacg
ggcaagatcggcggcaagccgctggtcggacgggaactcctcgcctgggtgggcgagttc
ctcacgaccgtcctggggtga
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