Streptomyces lydicus 103: SL103_13250
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Entry
SL103_13250 CDS
T04699
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
slc
Streptomyces lydicus 103
Pathway
slc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
slc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SL103_13250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slc03400
]
SL103_13250
Enzymes [BR:
slc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SL103_13250
DNA repair and recombination proteins [BR:
slc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SL103_13250
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AOP47091
UniProt:
A0A1D7VK40
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All DBs
Position
3076611..3077564
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AA seq
317 aa
AA seq
DB search
MDDSDDGTHDEGGDGATRTVRAGRRTVRIHRPDKVLFPDDGLTKAEVVDYYGRVAAAMVP
QLRGRPLMLERLPEGLGGPHFMQKETPDHYPDWIRRAEVAKEGGTVTHPLCDDKATLLFL
ADQACLTLHRWLSRADRPDHPDRLVFDLDPPGTDFEAVREAARALLGLLDELGLPAALMT
TGSKGLHVIVPLDGKSDFDTVRGFAQDTAEVLARRHPDRLTTAVRKKARGDRLYLDVQRN
AYAQTAVAPWSLRAVPGGPVAAPISHDQLDDPGLGAQSWSLRDVDGVLAQLRSAPWSAVP
GRGRSLTAARKRLDALR
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atggacgactcggacgacggcacgcacgacgagggcggggacggcgcgacgcgcaccgtc
cgcgccggacgccgtacggtgcggatccaccggccggacaaggtgctcttccccgacgac
gggctgaccaaggccgaggtcgtcgactactacggccgggtggccgccgccatggtcccg
cagctccgcgggcgccccctgatgctggagcggctccccgaagggctgggcggcccgcac
ttcatgcagaaggagaccccggaccactaccccgactggatccggcgggccgaggtcgcc
aaggagggcggcactgtcacccaccccctctgcgacgacaaggccaccctgctcttcctc
gccgaccaggcgtgcctcaccctgcaccgctggctgtcccgggccgaccggcccgaccac
ccggaccggctggtcttcgacctggacccgcccggcaccgacttcgaagcggtgcgcgag
gccgcccgggcgctcctcggcctgctcgacgaactcgggttgccggccgccctgatgacg
acgggctcgaaggggctgcacgtcatcgtccccctcgacggcaagagcgacttcgacacc
gtgcgcggcttcgcccaggacacggcggaggtgctggcacggcgtcacccggaccggctc
accacggccgtacgcaagaaggcgcgcggtgaccggctctacctcgacgtgcagcgcaac
gcctacgcgcagaccgccgtcgccccctggtcgctgcgcgccgtaccgggcggcccggtc
gccgcgccgatcagccacgaccagctcgacgaccccggactgggcgcacagagctggtcg
ttgcgggacgtcgacggtgtgctggcgcagctgcggtcggcgccgtggtccgcggtgccg
ggccgcggacggtcactgaccgccgcccgcaagcggctcgacgcgctgcgctga
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