Streptomyces lydicus A02: T261_1305
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Entry
T261_1305 CDS
T03756
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sld
Streptomyces lydicus A02
Pathway
sld03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sld00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
T261_1305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sld03400
]
T261_1305
Enzymes [BR:
sld01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
T261_1305
DNA repair and recombination proteins [BR:
sld03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
T261_1305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AJT62991
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All DBs
Position
1364089..1365021
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AA seq
310 aa
AA seq
DB search
MSTEDDTVRVGDRAIAISRPDKELFPDDGITKAELIDYYRAASRPMLTHLRGRPLAMERH
PDGYGGKAFFHKDVPDYFPDWIHRQEVTKEDGTVTMVVCDDAATLAYLANQACITPHPWL
SRVDSLNCPDRLVFDLDPPGDDFETVRWTARKLGDLLTTELGLQPAVMTTGSRGLHLVLL
LDRHTDFDGTRAFARQVADLLADRHPDRLTTEARKNKRRGRLYLDTQRNAYAQTSVAPYA
VRARPHAPVATPLEWDELDDPRLGPQHWTLRTLPDRLSEHGDPWKGLSRCRRSLGPAQRR
LDALLQEDTS
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
gtgagtacggaggacgacaccgttcgagtcggggaccgcgccatcgcgatctcccgtccg
gacaaggaactcttccccgacgacgggatcaccaaggccgaactgatcgactactaccgc
gccgcctcccgccccatgctgacccatctgcgcggacggcccctggccatggaacgccac
cccgacggctacggcgggaaggcgttcttccacaaggacgtccccgactacttcccggac
tggatccaccgccaggaggtcaccaaggaggacgggaccgtcaccatggtggtctgcgac
gacgccgccaccctcgcctacctcgccaaccaggcatgcatcacgccgcacccctggctc
agccgcgtcgacagcctcaactgcccggaccgactggtcttcgacctggatcccccgggc
gacgacttcgagaccgtccgctggaccgcgcgcaagctgggcgacctcctcaccacggaa
ctggggctgcagcctgcggtgatgacaacgggctcgcgcggcctgcacctcgtcctgctc
ctggaccggcacaccgacttcgacggcacgcgcgccttcgcccgccaggtggccgacctg
ctcgccgaccggcaccccgacagactcaccaccgaagcgcgcaagaacaagcgccgcggc
cggctgtacctggacacccagcgcaacgcctacgcccagacctccgtggccccctacgcc
gtccgggcccggccccacgccccggtagccacccctctcgagtgggacgaactcgacgac
ccgcggctcggcccacaacattggaccctgcgcaccctccccgaccgcctgtccgagcac
ggcgacccctggaaagggctgagccgctgccgacgctccctggggcctgcgcagcgccgg
ctcgacgcgctcctccaggaagacacctcctga
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