Streptomyces leeuwenhoekii: sle_12820
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Entry
sle_12820 CDS
T04414
Symbol
sle_12820
Name
(GenBank) Putative DNA ligase-like protein Rv0938/MT0965
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sle
Streptomyces leeuwenhoekii
Pathway
sle03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sle00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
sle_12820 (sle_12820)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sle03400
]
sle_12820 (sle_12820)
Enzymes [BR:
sle01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
sle_12820 (sle_12820)
DNA repair and recombination proteins [BR:
sle03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
sle_12820 (sle_12820)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
CQR60744
UniProt:
A0A0F7VLX0
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All DBs
Position
chromosome:complement(1594020..1594955)
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AA seq
311 aa
AA seq
DB search
MSDDGARTIRAGRRTVEIHRPGKVLLPGDGGAGRPQEYTKGDLVDYYRAVAPFMLPHLRG
RPLMLERYPDGPDGPRFMQKNTPDHYPEWITRVEVAKEGGTVCHTVCDDQATLLYLVDQA
AFTLHRWLSRTTAVDRPDRLVFDLDPPGDDFAPVREAAFLLSELLGELRLPCAPMTTGSR
GLHVVVPLNGRQDFDEVREFAHDVAGFLAAAHPGRLTTAARKKDRGGRLYLDVQRNAYAQ
TAVVPFTVRARPGAPVAAPFAWSQLDDPELHARRWTVADAVEQARTDPWAGIMSRPRALG
PARRRLNALRG
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgatgacggcgcccggaccatacgggccggccggcgcaccgtggagatccaccgg
cccggcaaggtgctgctgcccggcgacggcggggcggggcgcccgcaggagtacaccaag
ggcgacctcgtcgactactaccgggccgtcgccccgttcatgctgccgcacctgcggggc
cgcccgttgatgctggagcggtatccggacgggccggacggcccgcgcttcatgcagaag
aacaccccggaccactatccggagtggatcacccgggtggaggtggcgaaggaaggcggc
accgtgtgccacacggtctgcgacgaccaggccaccctcctctacctcgtcgaccaggcc
gccttcaccctgcaccgctggctgtcccggaccaccgcggtggaccggcccgaccggctc
gtgttcgacctcgatccgcccggcgacgacttcgcgcccgtgcgcgaggccgcctttctc
ctctcggagctgctcggcgaactgcggctgccctgtgcgccgatgaccaccggatcgcgc
ggactgcatgtggtggtgccgctgaacggccgtcaggatttcgacgaggtgcgggagttc
gctcacgacgtggccgggtttctggccgccgcgcatcccggccggctcaccaccgccgcc
cgcaagaaggaccgcggcggacggctctatctggacgtccagcgcaacgcctacgcgcag
accgcggtcgtgcccttcacggtccgcgcccggccaggcgcccccgtggccgctcccttc
gcctggtcgcagctcgacgacccggagttgcacgcgcgccgctggaccgtcgcagacgcc
gtcgagcaggcgcgcaccgacccctgggccgggatcatgagccgcccgcgggccctggga
ccggcccggcggcggctgaacgccctgcgcggctga
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