Streptomyces liangshanensis: HA039_21095
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Entry
HA039_21095 CDS
T07519
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
slia
Streptomyces liangshanensis
Pathway
slia03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
slia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HA039_21095 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slia03400
]
HA039_21095 (mfd)
Enzymes [BR:
slia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HA039_21095 (mfd)
DNA repair and recombination proteins [BR:
slia03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HA039_21095 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QIQ04463
UniProt:
A0A6G9H1Q4
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All DBs
Position
4864611..4868171
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AA seq
1186 aa
AA seq
DB search
MSLHGLLDAVIKDPALAEAVKAAADGHRTHVDLVGPPAARPFAVAALARESGRPVLAVTA
TGREAEDLAAALRTLLDPDTVVEYPSWETLPHERLSPRSDTVGRRIAVLRRLAHPAKDDP
SAGPVSVVVSPIRSVLQPQVKGLGELEPVALRSGQSADLNEVTEALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTPQVRERAAALAEVHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPEGSMAL
VCEPERVRTRAADLVATSQEFLQASWAASAEGGKAPIDVGAASLWGIADVRDRARELGMM
WWSVSPFAADSEADDMSAETIRLGMRAPESYRGDTSRALADTKGWLADGWRTVYVTEGQG
TASRTVEVLGGEGIAARLDTPEAGNGRGLVDISPNVVHVARGSIDWGFVDPALKLAVLTE
TDLSGQKAAGKDGQRLPTKRRKTIDPLTLEPGDFIVHEQHGVGRYVEMVQRTVQGATREY
LLVEYAAAKRGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKQRAKKAVKEI
AADLIKLYSARMAAPGHAFGPDTPWQRELEDAFPYVETPDQLSTIAEVKEDMEKTVPMDR
LVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYAQFPVSVKALS
RFQSDAEAKATLQGLREGAVDIVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKK
LRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEQKQIGAAVRR
ELLREGQVFYIHNRVESIDRAAARLREIVPEARIATAHGQMGESALEQVVVDFWEKKFDV
LVSTTIVESGIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRDRGYAYFLYPPEKPLTE
TAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVA
DYRAAVDGTVEEVAPLEVKIELPVDAHVPHEYAPGERLRLQAYRAIASANTEDDIKAVRE
ELTDRYGKLPEPVENLLLVAGLRMLARACGVGEIVLQGPNIRFAPVELRESQELRLKRLH
PRTVIKPAAHQILVPRPTAGKIGGKPVVGRELLSWTGEFLATILGS
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgccgtcatcaaggacccggcgctcgccgaagcggtg
aaggccgccgccgacggtcaccgcacgcacgtcgacctggtcgggccgcccgccgcgcgg
cccttcgccgtcgccgccctcgcgcgggagtcggggcggccggtgctggccgtgacggcg
accgggcgggaggccgaggacctcgcggcggcgctgcgtacgctgctggacccggacacc
gtcgtggagtacccgtcgtgggagacgctcccgcacgagcgcctctcgccccggtccgac
accgtcggccgccgcatcgccgtcctgcgccgcctcgcccaccccgccaaggacgacccc
tccgccgggccggtcagcgtggtcgtctcgcccatccggtccgtcctccagccgcaggtc
aaggggctgggcgagctggagcccgtcgccctgaggagcgggcagagcgccgacctgaac
gaggtcaccgaggccctcgccgccgctgcctacgcgcgcgtggagctggtcgagaagcgc
ggcgagttcgccgtacgcggcgggatcctggacgtgttcccgcccaccgaggagcacccc
ctgcgggtggagttctggggcgacgacgtcgaggagatccgttacttcaaggtcgccgac
cagcggtcgctggaggtcgccgagcacggcctgtgggcgccgccctgccgggagctgctg
ctgacgccgcaggtacgggagcgggccgccgcgctcgccgaggtccacccggagctgggc
gagctgctcggcaagatcgccgaggggatcgccgtcgagggcatggagtccctcgccccg
gtcctcgtggacgacatggagctgctgctcgacgtcctgcccgaggggtccatggccctg
gtgtgcgaaccggagcgggtacggaccagggcggccgacctcgtcgcgaccagccaggag
ttcctccaggcgtcctgggcggccagcgccgagggcgggaaggcccccatcgacgtgggc
gcggcctcgctgtggggcatcgcggacgtccgggaccgggcgcgcgagctgggcatgatg
tggtggtcggtgtcgccgttcgcggcggactccgaggccgacgacatgtcggccgagacg
atccggctcgggatgcgcgccccggagtcgtaccgcggcgacacctcccgcgccctcgcc
gacaccaagggctggctggccgacggctggcgcacggtgtacgtcacggagggccagggc
accgcctcccgtaccgtcgaggtgctgggcggcgagggcatcgcggcccgcctcgacacc
ccggaggccgggaacggccgcggcctcgtggacatctcgccgaacgtcgtgcacgtcgcc
cgcggctcgatcgactggggcttcgtcgatcccgcgctcaagctcgccgtcctcaccgag
accgacctctccggccagaaggccgccggcaaggacggccagcgcctgcccaccaagcgc
cgcaagaccatcgaccccctcacgctggagccgggcgacttcatcgtccacgagcagcac
ggcgtgggccggtacgtggagatggtgcagcgcacggtccagggcgcgacccgcgagtac
ctgctggtcgagtacgccgccgccaagcgcgggcagcccggcgaccggctgtacatcccg
accgaccagctggagcaggtgaccaagtacgtcggcggcgaggcgcccaccctgcaccgc
ctcggcggcgccgactggacgaagaccaagcagcgcgcgaagaaggccgtcaaggagatc
gccgccgacctgatcaagctctactcggcgcgcatggcggcccccggccacgccttcggc
cccgacaccccctggcagcgggagctggaggacgccttcccgtacgtggagacgccggac
cagctctccacgatcgccgaggtcaaggaggacatggagaagacggtcccgatggaccgg
ctggtgtgcggcgacgtcgggtacggcaagacggagatcgcggtacgggccgccttcaag
gccgtccaggacggcaagcaggtcgcggtgctcgtaccgacgacgctgctggtgcagcag
cacttcggtacgttctccgagcggtacgcgcagttccccgtctccgtgaaggcgctctcc
cgcttccagtcggacgccgaggccaaggcgacgcttcaggggctgcgcgagggcgcggtc
gacatcgtcatcggtacgcaccggctgttctcgtccgagacgaagttcaaggacctcggc
ctggtcatcgtggacgaggagcagcgcttcggcgtcgagcacaaggagcagctcaagaag
ctccgcgccaacgtcgacgtcctcacgatgtccgcgacgccgatcccccgcacgctggag
atggccgtcaccggcatccgcgagatgtcgaccatcaccaccccgccggaggagcgccac
ccggtgctgaccttcgtgggcccgtacgagcagaagcagatcggcgcggccgtgcgccgt
gaactcctgcgcgagggccaggtgttctacatccacaaccgggtggagtcgatcgaccgg
gccgcggcgcggctgcgcgagatcgtgcccgaggcgcggatcgccacggcgcacggccag
atgggcgagagcgccctcgaacaggtcgtggtcgacttctgggagaagaagttcgacgtg
ctggtctccacgacgatcgtcgagtccggcatcgacatctcgaacgccaacaccctgatc
gtggagcgcggcgacaacttcggcctgtcccaactgcaccagttgcgcggccgggtgggc
cgtgggcgggaccgcgggtacgcgtacttcctctacccgcccgagaagccgctgacggag
accgcgcacgaacggctcgcgacgatcgcccagcacaccgagatgggcgcgggcatgtac
gtggccatgaaggacctggagatccgcggcgcgggcaacctgctcggcggtgagcagtcc
ggccacatcgcgggggtgggcttcgacctgtacgtccgcatggtcggcgaggcggtcgcg
gactaccgggccgccgtggacggcacggtggaggaggtcgcgccgctggaggtcaagatc
gagctgccggtcgacgcgcacgttccgcacgagtacgcgccgggcgagcggctgcgcctc
caggcgtaccgcgcgatcgcctccgcgaacacggaggacgacatcaaggcggtacgcgag
gaactgaccgaccgctacggcaagttgcccgagccggtggagaacctgctgctggtcgcg
ggcctgcggatgctggcgcgggcgtgcggggtgggcgagatcgtgctccagggcccgaac
atccgcttcgcgccggtggagttgagggagtcgcaggagctgcggctcaagcggctgcat
ccccgtacggtcatcaagccggcggcgcaccagatcctggtgccgcgtccgacggcgggg
aagatcggcgggaagccggtggtgggacgcgaactgctgtcgtggaccggggagttcctg
gcgacgatcctggggtcctga
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