Sulfuricaulis limicola: SCL_1552
Help
Entry
SCL_1552 CDS
T05241
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
slim
Sulfuricaulis limicola
Pathway
slim03030
DNA replication
slim03430
Mismatch repair
slim03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
slim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SCL_1552
03430 Mismatch repair
SCL_1552
03440 Homologous recombination
SCL_1552
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slim03032
]
SCL_1552
03400 DNA repair and recombination proteins [BR:
slim03400
]
SCL_1552
Enzymes [BR:
slim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SCL_1552
DNA replication proteins [BR:
slim03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SCL_1552
DNA repair and recombination proteins [BR:
slim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SCL_1552
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
BAV33857
UniProt:
A0A1B4XGG3
LinkDB
All DBs
Position
complement(1553058..1556510)
Genome browser
AA seq
1150 aa
AA seq
DB search
MSRPFVHLRVHTEFSLADGIVRTDDLVKTAVRHGMPAVAVTDLANLFGVVKFYQAACAAG
VKPLIGADVWLENPADPHKPHRLVLLCQNTEGYRRLCRLLTRAYVEGQHSGRPCLAKSWL
EAPMSGLIALSGAHEGDIGQALLSGNVAHADELAHAWQQWFPGCFYLELQRTGQPFQEDY
NHAAVDLARRLSLPVVATNHVVFLQPDDFDAHEVRVCIQDGRVLTDTRRPRRYTPQQYFR
SSEEMAELFQDIPEALDNTVEIARRCNLHLELGKYYLPAYPVPEGMTIDQLLRRDSEQGL
EARLNLMPVETREAKRKLYTERLELELATIVKMGFPGYFLIVADFIQWAKQNGIPVGPGR
GSGAGSLVAWSLGITELDPIKYDLLFERFLNPERVSLPDFDVDFCIEGRDRVIEYVNHKY
GQDKVAQIITHGTMAAKAVVRDVGRVMDHPYGYVDKLAKLIPFEIGMTLERALEIEPQLA
ERYQKEDDVRDLLDTARVLEGLARSAGKHAAGVVIAPGPLTDYMPLYCEQGSTQTVTQFD
MGDVEAIGLVKFDFLGLRNLTIIDKALKTINAGRAEKGEPPVVIEQLPIDDPATYALIKS
ARTTALFQLESRGMKDLIQRLQPDNFEEIVALVALFRPGPLQSGMVDDFINRKHKRTAIK
YLHPSLEPILKPTYGVILYQEQVMQIAQVLSGYTLGGADLLRRAMGKKKPEEMAQQREGF
VQGAVARSVSDKLATHIFDVIEKFAGYGFNRSHSAAYALIAYQTAWLKAHYPAAFMAAVL
SSDMDKTDKVVTMMAECRDMKLNILPPDINRCEYHFVPVDDGTILYGLGAIKGLGAAAIE
AILQERHREGPFRDLFDFCQRIDLRKVNRRVLESLIKAGALDGLGTHRAALMASLNAALA
AADQHSRNLEAGQSDIFGATAAAPTEAHVYETVAEWSEEQRLDGERDTLGLYLTGHPIAR
YAEELKAITDATIAEIKPSSDSTLVVAGLVVAQRTMQTRRGDRMAFVTLDDRTGRLELAV
FSDLYAQSRELLAKDTLLVVEGQVSVDEYTGGFKMSAEKLYNIDQARAAFSARLVIDVNA
EQAGNGFVEELKEILRPAAQGKCPVYLHYRSPQAEAEIVLGDEWRISPTNNVLERLSRLA
GESSVHLIYR
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
gtgagccggcccttcgtccatttacgcgtccataccgagttttcactggcagacggcatc
gtccgcacggacgacctggtcaaaaccgccgtccgccatggcatgccggccgtggccgtg
accgatctggccaaccttttcggggtggtcaagttctatcaggccgcctgcgccgccggg
gtcaagcccctcatcggcgcggatgtgtggctggagaaccccgccgacccgcacaagccg
catcgtctggtcttgctgtgccagaacaccgaaggttatagacgtctgtgccgcttgctg
acgcgcgcctacgtggagggccagcattccggccggccctgtctcgccaagtcctggctg
gaagcgccgatgtcggggctgatcgcgctgtcaggcgcgcacgagggcgatatcggtcag
gcgttgctctccggcaatgtcgcgcacgcggatgagctggcgcatgcctggcagcaatgg
ttccccggctgcttttatctggagctgcagcgtaccggccagccgtttcaggaagattac
aatcacgccgcggtggacctggcgcgccggctgtcgctgccggtggtggcgacgaatcac
gtggtgttcctgcagccggacgatttcgacgcgcacgaggtcagggtctgcatccaggac
ggccgcgtgctgaccgacacccgccgcccgcgccgctacaccccgcagcagtatttccgc
tcaagcgaggagatggccgagctgttccaggacatccccgaggccctcgacaacacggtg
gagatcgcgcgccgctgcaacctgcatctcgagttgggcaaatattacctgccggcctac
ccggtgccggaaggtatgaccatcgaccagctgctgcggcgggattcggagcaggggctg
gaggcgcgcctgaatttgatgccggtggagacgcgcgaggcaaagcgtaaactttacacc
gaacgcttggagctggagctggccaccatcgtcaagatgggatttcccggttacttcctg
atcgtggccgacttcatccagtgggccaagcagaatggcattccggtcggtccggggcgc
ggcagcggcgccgggtcgctggtggcctggagtctcggcatcaccgagctcgatccgatc
aagtacgacctgctgttcgaacgtttcctgaacccggaacgcgtatcgctgccggacttc
gacgtggacttctgcatcgaagggcgagatcgcgtgatcgaatacgtcaaccacaagtac
ggccaggacaaggtggcgcagatcatcacccacggcaccatggcggccaaggcggtggtg
cgcgacgtcgggcgcgtcatggatcatccctacggttacgtggacaagctggcgaagctc
attcccttcgagatcggcatgacgctcgagcgcgcgctcgaaatcgagccgcagctggcg
gagcgctaccagaaggaagatgacgtgcgcgacctgctggacacggcgcgggtactcgaa
ggcctggcgcgcagcgccggcaagcacgcggcgggcgtggtgatcgcgcccggtccgctc
acggattacatgccgctctactgtgaacagggcagcacccagacggtcacccagttcgac
atgggtgacgtcgaggccatcgggctggtgaagttcgattttctggggctgcgcaacctc
acgatcatcgacaaggcgctcaagaccatcaatgccgggcgcgcagagaagggcgagcca
ccggtggtcatcgaacagctgcccatcgacgatcccgcgacctacgcgctgatcaagtcg
gcgcgcaccaccgcgctgttccagctggaatcgcgcggcatgaaggacctgatccagcgc
ctgcaaccggacaacttcgaggagatcgtggcgctggtggcgctgttccggccggggccg
ctgcagtccggcatggtggacgacttcatcaaccgcaagcacaagcgcaccgccatcaag
tacctgcatccgagcctggaaccgattctcaagcccacctacggcgtgatcctgtaccag
gagcaggtgatgcagatcgcgcaggtgctgtcgggctacacgctcggcggcgccgatctg
ctgcgccgcgccatgggcaagaaaaaaccggaggagatggcccagcagcgcgagggcttc
gtgcagggcgcggtcgcgcgcagcgtgagcgacaagctggcgacgcatatcttcgacgtc
atcgagaagttcgccggttacggcttcaaccgctcgcactcggcggcctatgccctgatc
gcctaccagacggcctggctcaaggcgcattacccggcggcgttcatggccgcggtgctg
tcgtcggacatggacaagaccgacaaggtcgtgaccatgatggccgaatgccgcgacatg
aagctgaacatcctgccgcccgacatcaaccgctgcgaatatcacttcgtgccggtggat
gacggcacgattctctacggcctgggcgccatcaagggcctgggcgcagccgccatcgag
gccatcctgcaggagcgccatcgcgaagggccgttcagggacttgttcgatttctgccag
cgcatcgacctgcgcaaggtcaaccggcgcgtgcttgagtcgctgatcaaggccggcgcg
ctcgacggcctcggcacgcatcgcgccgccttgatggcctcgctcaacgcggcgctggcc
gccgccgaccagcacagtcgcaacctcgaggccgggcagtcggacattttcggcgccacc
gcggccgcgcccacggaggcgcatgtctacgaaaccgtggccgagtggagcgaggaacag
cgcctcgatggcgagcgggatacgctcggcctgtatctcaccggccacccgatcgcgcgc
tacgccgaggaactcaaggccatcacggatgccaccattgccgagatcaaaccctccagc
gacagcaccctggtggtggcggggctggtggtggcccagcgcaccatgcagacccgtcgc
ggtgaccgcatggccttcgtgacgctcgacgatcgcaccgggcgcctggagctcgcggtg
ttttccgatctgtacgcgcaaagccgggagctgctggccaaggacaccctgttggtggtg
gaaggccaggtgagcgtggatgaatacaccggcggattcaaaatgtccgccgagaagctc
tataatattgatcaggcccgggccgcgttcagcgcgcggctggtgatcgacgtcaatgcc
gagcaggcgggcaatggttttgtcgaggagctgaaggaaattctccggcccgcggcgcag
ggcaagtgcccggtgtatctgcattaccggagcccgcaggcggaggccgagatcgtgctg
ggcgatgaatggcgcatcagcccgacgaacaacgtgctggagcgcctgtcgcgcctggcc
ggtgaaagcagtgtgcatctgatatatcgctga
DBGET
integrated database retrieval system
