KEGG   Shewanella litorisediminis: JQC75_12695
Entry
JQC75_12695       CDS       T07182                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
slit  Shewanella litorisediminis
Pathway
slit03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:slit00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    JQC75_12695
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:slit03019]
    JQC75_12695
Enzymes [BR:slit01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     JQC75_12695
Messenger RNA biogenesis [BR:slit03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     JQC75_12695
SSDB
Motif
Pfam: DEAD Helicase_C ResIII
Other DBs
NCBI-ProteinID: QRH00735
LinkDB
Position
complement(2903977..2905326)
AA seq 449 aa
MSFDSLGLAAPLLQTLIQCGYRAPTEIQAQSIPVLLSGRDLIAVAQTGSGKTAAFALPIL
QQLAARKPRGSIQALVLVPTRELAVQVADAFTRYSAGLGLTTLAVYGGVNIRPQRQALAA
GVDILVATPGRLLDLTGQFGLSLAEVNTLVLDEADRMLDMGFAPDIDKIRRQLGPHQSAM
FSASFAERERELAGRMLSNAVSLTAMDTGRVPQQLALEVFMLDKPRWAEFVAELVGKRNW
RQALVFVPSRDEANGLVAELALDGLQAAAFHGERTQGARRRGLDEFKSGKLRLLVATDVA
ARGLDIEDLPVVISLGLPHGEEDLIHRLGRSARAGREGLAVVVLSPEMRADLPLLEALCP
TLPEVITPVGYSAKDPLPQRYRDGTATKPATKPANKSGHSGSRSGRGAGNRTSGRSGSRT
DSRSGSNGSQRQSGKPARQGNAPKRHSRG
NT seq 1350 nt   +upstreamnt  +downstreamnt
atgtccttcgattcgctgggattggcagcgcccctgctacagacactgatacagtgcgga
tatcgtgcgccaacagaaattcaggcccagagtatcccggtgctcctcagtggccgcgat
ttgattgcggtggcgcaaaccggcagcgggaagacggcggcctttgctctgcccatcttg
cagcagttggctgccaggaagccgcgaggcagtattcaggcgctggtactggtgccaacc
cgggagcttgcggtgcaggtcgctgatgcctttacgcgctacagtgctggcctggggctg
acgacgctggcggtttacggtggggtgaatattcgtccccagcgccaggcgcttgccgcc
ggggtcgatattctggtggcgacaccggggcgccttttggatttgaccggccagtttggt
ctgtcgctggctgaggtcaacaccctggtgctggatgaagcagaccgcatgctcgacatg
ggatttgcccccgacatagataaaattcgccgtcagcttggaccacaccaaagcgccatg
ttttcagcgagttttgccgagcgggaacgtgagttggcaggacgcatgctatccaacgcc
gtgagccttaccgccatggataccggccgcgttccccagcagcttgcccttgaggtcttt
atgctcgacaaacctagatgggctgagtttgtggctgagcttgtgggcaagcgcaactgg
cgccaggcgctggtgtttgtgccatcccgggatgaggccaatgggttggtggcagagctt
gccctcgacgggctgcaggcggctgccttccatggcgagcgaacccagggcgccagacga
cgcgggctggatgagttcaagtccggcaagctgagattgctggtggcaaccgatgtggcg
gcgcggggactggatatcgaagacttgcccgtggtgataagtctggggctgccccacggt
gaagaagacctgatacatcgccttggccgcagcgccagagccgggcgggaaggccttgca
gtggtagtgctgtcaccggaaatgcgcgccgatttgcccctgctggaggctctgtgcccg
acattgcccgaggtaatcaccccagtgggttacagcgcgaaagatcccctgccgcagcgg
tatcgcgacgggactgcaaccaagccggcaaccaagcctgccaacaagtctggccacagt
ggcagtcgctcaggccgcggtgcaggcaatcgtacgagcggtcgctctggcagccgcaca
gacagccgctcaggcagcaatggctcacagcgacaatcaggaaagccagcccggcagggg
aacgcgccgaaacggcactcccgtggctga

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