Shewanella litorisediminis: JQC75_12695
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Entry
JQC75_12695 CDS
T07182
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
slit
Shewanella litorisediminis
Pathway
slit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JQC75_12695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slit03019
]
JQC75_12695
Enzymes [BR:
slit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JQC75_12695
Messenger RNA biogenesis [BR:
slit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JQC75_12695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
QRH00735
LinkDB
All DBs
Position
complement(2903977..2905326)
Genome browser
AA seq
449 aa
AA seq
DB search
MSFDSLGLAAPLLQTLIQCGYRAPTEIQAQSIPVLLSGRDLIAVAQTGSGKTAAFALPIL
QQLAARKPRGSIQALVLVPTRELAVQVADAFTRYSAGLGLTTLAVYGGVNIRPQRQALAA
GVDILVATPGRLLDLTGQFGLSLAEVNTLVLDEADRMLDMGFAPDIDKIRRQLGPHQSAM
FSASFAERERELAGRMLSNAVSLTAMDTGRVPQQLALEVFMLDKPRWAEFVAELVGKRNW
RQALVFVPSRDEANGLVAELALDGLQAAAFHGERTQGARRRGLDEFKSGKLRLLVATDVA
ARGLDIEDLPVVISLGLPHGEEDLIHRLGRSARAGREGLAVVVLSPEMRADLPLLEALCP
TLPEVITPVGYSAKDPLPQRYRDGTATKPATKPANKSGHSGSRSGRGAGNRTSGRSGSRT
DSRSGSNGSQRQSGKPARQGNAPKRHSRG
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgtccttcgattcgctgggattggcagcgcccctgctacagacactgatacagtgcgga
tatcgtgcgccaacagaaattcaggcccagagtatcccggtgctcctcagtggccgcgat
ttgattgcggtggcgcaaaccggcagcgggaagacggcggcctttgctctgcccatcttg
cagcagttggctgccaggaagccgcgaggcagtattcaggcgctggtactggtgccaacc
cgggagcttgcggtgcaggtcgctgatgcctttacgcgctacagtgctggcctggggctg
acgacgctggcggtttacggtggggtgaatattcgtccccagcgccaggcgcttgccgcc
ggggtcgatattctggtggcgacaccggggcgccttttggatttgaccggccagtttggt
ctgtcgctggctgaggtcaacaccctggtgctggatgaagcagaccgcatgctcgacatg
ggatttgcccccgacatagataaaattcgccgtcagcttggaccacaccaaagcgccatg
ttttcagcgagttttgccgagcgggaacgtgagttggcaggacgcatgctatccaacgcc
gtgagccttaccgccatggataccggccgcgttccccagcagcttgcccttgaggtcttt
atgctcgacaaacctagatgggctgagtttgtggctgagcttgtgggcaagcgcaactgg
cgccaggcgctggtgtttgtgccatcccgggatgaggccaatgggttggtggcagagctt
gccctcgacgggctgcaggcggctgccttccatggcgagcgaacccagggcgccagacga
cgcgggctggatgagttcaagtccggcaagctgagattgctggtggcaaccgatgtggcg
gcgcggggactggatatcgaagacttgcccgtggtgataagtctggggctgccccacggt
gaagaagacctgatacatcgccttggccgcagcgccagagccgggcgggaaggccttgca
gtggtagtgctgtcaccggaaatgcgcgccgatttgcccctgctggaggctctgtgcccg
acattgcccgaggtaatcaccccagtgggttacagcgcgaaagatcccctgccgcagcgg
tatcgcgacgggactgcaaccaagccggcaaccaagcctgccaacaagtctggccacagt
ggcagtcgctcaggccgcggtgcaggcaatcgtacgagcggtcgctctggcagccgcaca
gacagccgctcaggcagcaatggctcacagcgacaatcaggaaagccagcccggcagggg
aacgcgccgaaacggcactcccgtggctga
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