Spodoptera litura (tobacco cutworm): 111354386
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Entry
111354386 CDS
T08157
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA cleavage complex 2 protein Pcf11-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
sliu
Spodoptera litura (tobacco cutworm)
Pathway
sliu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sliu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111354386
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sliu03021
]
111354386
03019 Messenger RNA biogenesis [BR:
sliu03019
]
111354386
Transcription machinery [BR:
sliu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111354386
Messenger RNA biogenesis [BR:
sliu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
111354386
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Pcf11_helical
CFIA_Pcf11
zf_UBZ
VHS
Motif
Other DBs
NCBI-GeneID:
111354386
NCBI-ProteinID:
XP_022823595
UniProt:
A0A9J7IUD0
LinkDB
All DBs
Position
18:complement(646171..664902)
Genome browser
AA seq
1704 aa
AA seq
DB search
MSKEVAEEYASSLADLTVNSKPLINMLTILAEENIDHAGVIVETVEKHLEKVHPDIKLPV
LYLVDSIIKNVGGAYTQKFSQSIVNMFTRTFKQVIIVDEKVRSQMFKLRETWHDVFPATK
LYQLDVKVNLIDPAWPIQAQPQQSNIHTTPTTSTTITPAPVVPAEEDEKMRNILAKKEQE
LLMLQRKKVEMELEQMRRQVELAEKTVTKKVPGTAPTNVNATNMAAPTPAPAAAVLPEVT
TNIPIKQRLGPPVPKSTGRIAPVSASLASARRDPRLARLQQGAGTAPAAPSPPVAVVAPA
AAPLAPIAPNVFDIKPLERVTKRKNVITIDVRQDAEPARPATRDPRRRDPRLEKRDPRRT
RPREERERRREELRRAESERNHTETKPEAERNPMPAYVDKLPDPKKISKMPPIPKITRSE
TKRDGEAVPAKRNKRDNVRTERRRRREELAQKEGERAKPAPAVPAAPPAADKKRASPELV
AFKELRNYHKEHYMRRNRDKSASPEHVESGAEGAVTSEPPSVPEIISETKDIDLRVLPAV
VTEAKAASIGQKRSSTETTEVKTKKTKIDKFDVLFGNEDVDLRQLPQVDEVNAPPPPSIT
GSPKSDNKVEEDVAMVSPAKGSPKRDWNEIKKRDDKKTPSKLDLVRAKFAEVTKGKDRLG
RPLLFSKSPSIERERRRTLSSEDIDLREDDEQGFVENKKSISIIMSQAKEHFTDGQLDKN
QYNTLMYQILQLNEKLKLKEAKQRESLEISKRKLKATIEENHKVPSPKSSPNERNRFGDI
DERITPSVYLDTPPESQGVLGQDSDMRLGAEALDMKTKGLLPIPPMMPMFGPYQPQMPWR
GPRPRAGEEFGPKRFRGPMPPYFRAGKFDKRAVRPPFDPRMAMPPLFTPKIGMCQGECPL
TPYERSESPPPLGAPGFAIPPTDFKVIEYIDQDPFKTIQIDGIPREIRFYGNTAVIMLDW
DDPREIKFLPGCRRVTFDNKDSVVLTFSEGYKQVEFDDQVFDIKFGAPTRELYINGRWYE
CFFGGQPLGVIIDGKPRLVHLEGPMPQVDIGKAKRTDLVAGKINLIVNATQMHPVYLDAK
VQKILVNGQYLTVRFVDSLRTVLINEQPFKVEFGGLPKPIVVGSEKYFIRFSALPRNIKP
GHVQIANMEGIGLPLVPPVKNVDELKKEENPMEVDQQEELISRPVKTPSSEPNPESLGLD
MLASVMPSSTVPASGSEYSVAEPLFSKTDKIPGLETPMXEKPAPVLPILDNINVNDLFAK
LVATGIVQVPTTTQPEPQEEAKNKPEEVKNKPREDKNIIHKVDFMKSETFRVKQPGLVAK
LYGGMQCSGCGARFPPEHTVRYSQHLDWHFRQNRRDRDSARRAHSRHWHYDLSDWVQYEE
VEDLEEREKSWFETGGIPAASGEGAVETPAPAPLATPSAAASAPASHCCALCGDMFQQFY
NEDKEEWHLRNAIKHNDDYYHPLCFEDYKTSLTKAGEPKVKDIASEAKVEEEGIETKDVD
ETAEQSDNESVVEVVEDPKELDPVEIDEEDDEDDVVFKAEPVVEVVVEDDAETDDELTAE
RAERDRLAEIDFSKIKVKQEPIDPDDEPIVTAEEETIPTRIDHTHPTVESSIDGNLQLDA
ASIPTASIPIGGIRINISKSLPSFVTNNQEEKILEDVSADDEPLPPGEEPELEYTLKPAL
QGVQFSRQPPVNKGNELSGLCSIM
NT seq
5115 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaggaagtagcggaagagtatgcttccagtttagcggacctaaccgtaaacagc
aaaccgctgataaatatgttgacgattctcgcagaagagaacatcgaccacgccggggtt
atcgttgaaacagtggagaagcatttagagaaggtacacccagacatcaagctgccagta
ctgtatttagttgattcgattatcaagaatgtcggtggagcctacacacagaagttttct
caaagcattgtcaatatgtttaccaggactttcaaacaggtaattattgtggatgaaaaa
gtcaggtctcaaatgtttaagcttcgtgagacttggcacgatgtgtttcctgctacaaag
ctgtaccaactggatgtgaaagtgaacttgattgacccggcgtggccgatacaagcacag
ccgcagcagtcaaacatccatactacccctaccaccagcactacaatcactccagctcca
gtcgtccctgctgaagaggacgagaagatgaggaatatcctcgccaagaaagaacaagag
ctcctcatgctgcagaggaaaaaggtggagatggaactagaacagatgcggcgacaggtc
gagcttgcagagaaaactgttactaaaaaggtgccgggcactgcccccactaatgtaaac
gccaccaatatggccgcgcccactcctgcgcctgcggccgccgtgttgcctgaagtgaca
accaatatacccatcaaacagcgactcggaccgccggtacctaagagtacgggtcgtatc
gcacccgtgagcgcctccctagcgagcgcccggcgcgacccgcgactggcgcgcctgcag
cagggcgccggcaccgcccccgccgcgccctcgccgcctgtcgccgtcgtggcgcccgcc
gccgcgccgctcgcacctatcgcgcccaacgtctttgacatcaaacccctcgagcgcgtc
accaaacggaagaatgtcataactatagacgtgcggcaggacgccgagcccgcccggcct
gctaccagggacccgcgccgccgcgacccgcgtctcgagaaacgcgacccgcgccgtact
cgtccgcgtgaggaacgggaacggaggcgcgaagaactgcgtcgagcagagtcagaacgc
aaccatactgaaactaaaccagaagcggagcgtaatccgatgcccgcttatgtcgataag
ttgcctgacccaaagaaaattagtaagatgccacctatacctaaaatcacccggtcagaa
accaaacgagacggtgaagcagtgcccgccaaacgtaataagcgtgacaatgtgcgcact
gagcgcagacggcggcgcgaggagctggcccagaaggaaggcgagcgcgccaagccagcg
cccgcggtgccggcagctccgcctgctgcggacaagaagcgcgcgtcgcccgagttggtg
gcgttcaaggagttgcgcaactaccacaaggagcattacatgcgtcgcaaccgcgacaag
tcagccagtccagagcacgtcgagtcaggcgcagaaggcgccgtgacctccgagccccca
agtgttccagaaattatatcagaaactaaggacatagatcttcgagtattacctgcagta
gtaacggaggccaaagccgcttctataggacagaagcgatcttccacagagactacggaa
gttaaaactaagaaaacaaagattgataaatttgatgtgttatttggtaatgaggatgtt
gatttacgccaactaccacaagtagatgaagtgaatgccccgcctccaccttctatcact
ggctcgccgaagtccgacaacaaagtggaagaagatgtagcaatggtgtcaccagccaaa
ggttcaccgaagagggattggaacgagattaagaagagagatgacaagaaaactccctca
aaactcgaccttgtacgggctaagtttgccgaagtaacgaagggcaaagataggcttggc
cgacctctactgttcagcaaatcgccaagtatcgaaagagaaaggcgacgtactttgtct
agcgaagatattgatctcagggaagatgatgaacaaggcttcgttgaaaacaaaaaatct
atttcaattataatgtctcaagcaaaggaacacttcacagatggacaattagacaagaac
caatacaacactctaatgtaccaaattcttcaacttaatgagaaactcaagctgaaggag
gccaaacagagggagtcattggaaatttccaaaaggaagctcaaagctacaatagaagaa
aaccacaaagtaccaagcccaaaatcgtcgcctaatgaacgaaacagatttggtgatatt
gatgagagaatcacgccgtctgtataccttgatacgccgcccgagagccaaggagtgttg
ggtcaggactcggatatgcgactcggtgctgaagcccttgatatgaagacaaagggtttg
ctccctatccctcccatgatgccaatgttcggcccttaccagccacaaatgccttggcgt
ggaccaagaccacgagcaggtgaagaattcggtcctaaacgattccgaggtccaatgcca
ccatacttccgagccggcaagtttgataagagggctgttagaccgcctttcgaccctcgt
atggcgatgcctcctctatttacacccaaaattggtatgtgtcaaggagagtgtccgcta
acaccttacgaacgaagcgaatctccacctccattgggagctccaggcttcgcaatccca
ccgacagattttaaagtcattgagtatatagatcaggaccccttcaaaaccatccaaatt
gatggtatacctcgggaaatcaggttttacggtaacaccgccgtaattatgctggattgg
gatgatccaagggaaatcaagttccttcctggatgcagacgagtaacgttcgacaataaa
gactcagtagtactaacattcagtgaaggctacaagcaagtggaatttgatgatcaagta
ttcgatattaaatttggtgcaccgacacgagaactgtatataaacggtaggtggtacgaa
tgtttcttcggtggacagccattaggcgtaattattgacggtaaaccaagattggttcat
ttggaaggacctatgcctcaagtggacatcggtaaagctaaacgaaccgacttagtagcc
ggtaagatcaatctcattgtgaatgctacacagatgcatccagtgtacttggacgcaaag
gtacaaaagattttggtcaatggacagtatctgaccgtgcgcttcgtagattcattgcgc
acagttttaatcaatgaacagccttttaaagtagagtttggaggccttcccaagcccatc
gttgttggcagcgagaaatattttataaggttctccgctctgccgagaaatattaagcct
ggacatgtccagattgctaatatggaaggcataggcttgccactggtgccacccgtcaag
aatgtcgatgaacttaagaaagaggaaaacccaatggaagttgaccaacaagaagaactc
atttcgcgtccggtgaagacgcccagctctgaaccgaaccctgagagtctaggtctcgac
atgttggcgagcgtcatgccgtccagtactgtgcccgcctccggctcggagtacagcgtg
gccgagcctctattctccaaaacagacaagatccctggacttgagacacccatgtaagag
aaaccagctccagtactgccaatattagacaacattaatgtcaacgaccttttcgctaag
ctggtggcgactggtattgtgcaagtgccgaccactacccagccagagcctcaagaggaa
gcaaagaataaacctgaagaagttaagaataaaccaagggaagataagaatattatccat
aaagtagactttatgaaatctgagacattcagagttaaacaaccaggactggtggctaag
ttgtacggcgggatgcagtgttcagggtgtggggctcggttcccgcccgagcacacggtg
cgatactcacaacacttggactggcacttccgacagaaccgacgcgacagggactcggcg
cgccgcgcgcactcacgacactggcactacgacctgtcagactgggttcagtatgaggag
gtcgaggacttggaggaaagagaaaagagttggttcgagacgggcggtatccccgcggcg
tcgggcgagggcgcggtggagacgccggcgcccgccccgctggccactccgtccgccgcc
gcctccgcgcccgcctcgcactgctgcgcgctctgcggggacatgttccaacagttctac
aacgaggacaaggaggaatggcacctcaggaatgctatcaaacacaacgatgattactat
catccactctgcttcgaagactacaaaacgtcactaacaaaggcaggagaacctaaagta
aaagacatcgcatctgaggcaaaggtggaagaggaaggcattgagacgaaagatgtggat
gagactgcagagcagtctgacaacgaatctgtggttgaagtcgtcgaggacccgaaggag
ttggaccccgttgaaatcgatgaagaagatgacgaggacgatgtcgttttcaaagcagag
ccagtggtcgaggttgtcgttgaagatgacgctgaaacggatgacgagcttactgctgaa
agagctgaacgagaccgtctcgcagagattgatttcagtaagatcaaggtcaagcaggaa
cccatcgatcccgatgacgaaccaatagtaactgctgaagaagaaaccatcccaacgcga
atagaccacacacatccaacagtggagtcatctatcgacgggaaccttcaactggatgcg
gcaagcattcccacagcctccatacccattggaggaatccggatcaacatctccaaatcc
ttgccttcctttgtgactaataaccaggaagaaaaaatactggaggacgtgagtgctgat
gatgagcccttgccaccaggtgaggagcctgaactagaatacacgttgaaaccagcactt
cagggtgtccagttcagcaggcaacctccagtcaacaaaggcaatgagctctctggattg
tgctccatcatgtaa
DBGET
integrated database retrieval system
