Stenotrophomonas sp. LM091: BIZ42_15090
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Entry
BIZ42_15090 CDS
T04630
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
slm
Stenotrophomonas sp. LM091
Pathway
slm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
slm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BIZ42_15090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slm03400
]
BIZ42_15090
Enzymes [BR:
slm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BIZ42_15090
DNA repair and recombination proteins [BR:
slm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BIZ42_15090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_30
SWI2_SNF2
RecG_dom3_C
ERCC3_RAD25_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AOX63409
UniProt:
A0A1D8YD34
LinkDB
All DBs
Position
complement(3421555..3425022)
Genome browser
AA seq
1155 aa
AA seq
DB search
MSRTSYPAPPLPRPGQLRAWWRAPASATALAWYIARAAQSHDGPLLVVARDNHGANQIEA
DLHTLLGSAGDVPIVAFPDWETLPYDAFSPHPDIISQRLAALHALPALKRGIVVVPVQTL
LQQLAPLKYVIGGSFDLTVGQRLDLDAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVYP
MGADAPLRVELLDEDIDSIRAFDPESQRSLDKVEAVHMLPGREVPLDDLSVSRVLATLRE
RFDVDTRRSALYQDLKAGIAPAGIEYYLPLFFDQTATLLDYLQPNVLPVLAPNVFEAAAA
FWAQTQNRYEQRRHDVERPLLAPEELYASPEQLRATLNGLARVEVWPPDHDRIADAQPLG
DQPLPPLPVAARDAPAGEALKSFIGHYPGRVLIAADSAGRREALLEVLLAAELKPPVVAD
LPGFLADDSVRFGITVAPLEDGFALENPPIAVLTERQLFPERAGQQRRSRRAGREPEAII
RDLGELSEGSPIVHEDHGVGRYRGLIVLDAGGMPGEFLEIEYAKGDRLYVPVAQLHLISR
YSGASPETAPLHSLGGEQWTKAKRKAAEKVRDVAAELLEIQARRRARAGLALHVDRAMYE
PFAAGFPFEETPDQLAAIDATLRDLASSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQ
VAVLVPTTLLAEQHYRNFRDRFADWPLKVEVLSRFKSTKEIKAELEKVAAGTIDVIVGTH
RLLQPDVKFKDLGLVIVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLR
DLSIIATPPPNRLAVKTFITAWDNALLREAFQRELARGGQLYFLHNDVESIGRMQRELAE
LVPEARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNANTIIINRADRF
GLAQLHQLRGRVGRSHHRAYAYLVVPDKRAMTPDAEKRLEAIASMDELGAGFTLATHDLE
IRGAGELLGEDQSGQMAEVGFSLYTELLERAVRSIRLGKLPDLDAGEEARGAEVELHVPA
LIPDDYLPDVHTRLTLYKRISSARDNGELRELQVEMIDRFGLLPDPAKHLFAIAELKLQA
NVLGIRKLELGENGGRIVFNPKPEIDPMAVIQLIQKQPKLYTMDGPDKLRIKHPLPLPED
RFSAAKALLLTLSPR
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgtcacgcacctcctatcccgctccgccgctgccacgtcctggacagctccgcgcctgg
tggcgcgctcccgcttcggcgacagcgctggcgtggtacatcgcccgcgcggcacagtcg
cacgacgggccgttgctggtggtcgcgcgcgacaaccatggcgcgaaccagatcgaagcc
gacctgcacaccctgctgggcagtgctggcgatgtgccgatcgtggccttcccggactgg
gaaaccctgccctacgacgccttcagcccgcacccggacatcatttcccagcgcctggcg
gcgctgcacgccctgcccgcgctcaagcgcggcatcgtcgtggtgcctgtgcagacgctg
ctgcagcagttggccccgctcaagtacgtcatcggcggcagcttcgacctgacggttggg
cagcggctggatctggatgcggaaaagcgccgtctggaatcggccggctaccgcaacgtg
ccgcaggtgatggacccgggtgatttcgccgtgcgtggcggcctgctggatgtctatccg
atgggtgccgatgcgccgctgcgggtggaactgctggacgaagacatcgattcgatccgc
gccttcgatccggaatcgcagcgttcgctggacaaggtcgaggccgtgcacatgctgccc
ggccgcgaagtgccgctggacgatctcagcgtctcgcgggtgcttgctacgctgcgcgaa
cgcttcgacgtggacacccgccgcagcgcgctgtaccaggatctcaaggccggcatcgca
cctgccggcatcgagtattacctgccgctgttcttcgaccagaccgcgaccctgctcgat
tacctgcagcccaacgtgctgccggtgctcgcgcccaacgtgttcgaggccgctgccgct
ttctgggcgcagacccagaaccgctacgaacagcgccgccatgatgtggagcgcccgctg
ctggccccggaagagctgtacgccagcccggaacaactgcgcgccacgctcaacgggctg
gcccgggtggaggtctggccgccggatcacgaccgcatcgccgatgcgcagccgctgggc
gaccagccgctgcctccgctgccggtcgccgcgcgtgatgcgccggccggagaagcgctc
aaatccttcatcgggcattacccgggccgggtgctgatcgccgccgattccgccggccgc
cgcgaggcgctgctggaagtactgctcgccgcggagctgaagccgccggtggtcgccgac
ctgcccggcttcctggccgatgacagcgtgcgcttcggcatcaccgtggcgccgcttgaa
gacggcttcgcgctggagaacccgccgatcgcggtgctcaccgagcgccagctgttcccg
gaacgggccggccagcagcgccgcagccgccgcgccgggcgcgagcccgaggcgatcatc
cgcgacctcggcgagctgagcgaaggctcgccgatcgtgcatgaagaccacggtgtcggc
cgttaccgcggcctgatcgtgctcgatgccggcggcatgcccggcgagttcctggaaatc
gaatacgccaagggcgaccgcctgtacgtgccggtcgcccagctgcacctgatcagccgc
tattccggtgcctcgccggaaaccgctccgctgcattcgctcggtggcgagcagtggacc
aaggccaagcgcaaggcggccgaaaaggtccgcgacgtcgccgccgaactgctggaaatc
caggcacgtcgccgtgcccgtgccggcctggcgctgcacgtggaccgcgcgatgtacgag
ccgttcgcggccgggttcccgttcgaggagacgcccgaccagctcgccgcgatcgacgcg
acgctgcgcgatctggccagcagccagccgatggaccgcgtggtctgcggcgacgtcggc
ttcggcaagaccgaagtcgccgtacgcgccgcgttcgccgcggccagtgcaggcaagcag
gtggccgtgctggtgccgaccacgctgctggccgaacagcattaccgcaacttccgcgat
cgtttcgccgattggccgctcaaggtggaggtgctgtcgcgcttcaaatccaccaaggag
atcaaggccgaactggagaaggtcgcggccggcaccatcgatgtgatcgtcggtacgcac
cggctgctgcagccggacgtgaagttcaaggatctgggcctggtcatcgtcgatgaagag
cagcgcttcggtgtgcgccagaaggaagcgctcaaagcgatgcgcgccaacgtgcacctg
ctcacgctgaccgccacgccgatcccgcgcacgctcaacatggccatggccgggctgcgc
gatctgtccatcatcgccacgccgccgccgaaccgcctggcggtcaagaccttcatcacc
gcctgggacaacgcgctgctgcgcgaggcgttccagcgcgagctggcccgtggtggccag
ctgtacttcctgcacaacgacgtggagagcatcggccgcatgcagcgcgagctggccgag
ctggtgcccgaggcccgcatcggcatcgcgcacgggcagatgcccgagcgcgagctggag
cgggtgatgctcgacttccagaagcagcgcttcaacgtgctgctgtcgaccacgatcatc
gaatcgggcatcgacatccccaacgccaacaccatcatcatcaaccgcgccgaccgcttc
ggcctggcccagctgcaccagctgcgcggccgtgtcgggcgttcgcaccaccgtgcctac
gcctacctggtggtgccggacaagcgcgcgatgacgcccgatgccgaaaagcgcctggag
gcgatcgcctcgatggacgaacttggcgccggctttaccctggccacccacgatcttgag
atccgcggtgcgggcgaactgctcggcgaagaccagagcgggcagatggccgaggtcggt
ttcagcctgtacaccgaactgctcgaacgggcggtgcgcagcatccgcctgggcaaactg
ccggacctggatgcgggcgaagaagcgcgcggtgccgaggtcgaactgcatgtgccggcg
ttgatcccggacgactacctgcccgacgtgcacacccgactgaccctgtacaagcgcatc
agcagcgcgcgcgacaacggtgagctgcgcgaactgcaggtggagatgatcgaccgcttc
ggcctgctgccggacccggccaagcaccttttcgccatcgccgaactcaagctgcaggcc
aacgtgctgggtatccgcaagctggaactgggcgagaacggtggccgcatcgtgttcaat
cccaagccggagatcgacccgatggcggtgatccagctgatccagaagcagcccaagctg
tatacgatggatgggccggacaagctgcgcatcaagcacccgttgccgctgcctgaagac
cgcttcagtgccgccaaggcattgctgctgaccctgtccccgcgctga
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