Shewanella loihica: Shew_3237
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Entry
Shew_3237 CDS
T00489
Name
(GenBank) Na-Ca exchanger/integrin-beta4
Organism
slo
Shewanella loihica
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CarboxypepD_reg
Calx-beta
CarbopepD_reg_2
CooC_C
Cleaved_Adhesin
Motif
Other DBs
NCBI-ProteinID:
ABO25103
UniProt:
A3QI05
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Position
complement(3863407..3867945)
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AA seq
1512 aa
AA seq
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MGIKKSTWQGCSSVGLAGLLATVSAFSCAASSPVVGESLNQASSTPLVKLANKMLVSNKL
KFQPTAQTKLAKPSISASNQALMEAQYQEQMASAVALEQYSDTAVQAEPGSGAMPAPELN
FDGLTRSGFDEAPMPDAAGDVGRDHYVQVVNMAFAVWDKEGNLLVDRTPMTEFWKRLGGV
CGDPNANPAPAKPWESPTTEREPIVLYDQLADRWVVTQNAYVSGKESRQCFAVSKTSDPT
GDWHLYEFELNGDKWHNGAQLGVWSDGYYLSANQHNKSDNSKAGTAAVVFERDKMLYGVP
ARSIYFDAPLTANLLPVDLDGKRAPAAGTPNYFLSLQDDKVHGSAQDEIQVWAFKADWNN
PQNSQFSQVAALATEPFDINEACGNTCIEQDSWGGDSYNALKAYQDKLMYRAAFRQFGDH
QSLVVNHTVDVGEQHFGVRWYEIRNLGAGAEIFQQGSYAPDVNHRWLASMAMDASGNIGM
GFAISGEEMLPSVRYTGRLNGDPLGQISLAEQVLVDAEAAQVNSFDGHYGKRSMMTIDPT
DDCSFWYTQEYGADHDFESMWATRIGKFSFPNCVADPTGMLHGVVTDSVTGLPLANAEVV
AGPYSTVADEEGKYQLQLPVGDYQVSARAYGHTKASQGSVSVAKDADLERNVVLTEMPQV
TISGKISDGSGHGWGVPGAISQNGELIPTMPIATDAIDGSFSVVGYEGWPVAITARAPGY
QPETMDLVPGSDGVSGLAFNLAVDKQVCSALGYRKIDTNTASLVNFESPDFPPQGWTVVD
AAGTGIVWKTNEQWERPNNTTGEGLAASIDSDKGGRKAYDSSLLTPIMSVAELGGFTTVR
FKEGFRPSGDSALDMDISVDGGEWQTLHSANASEQGTVVNVDIGEALVGGSNFRLRWRYH
NANEFAWDWWAQIDDVEFGLGCSMEQGGLAVGNITDANTQEAIAQAKVWLGDTQVATNTE
GQYRLFESAGNQVISATQSGYGVSNSQLTVTDNKIAVQHLSLKAGMLEVDKPELAATVRS
GKQSELSLTVKNVGSRGVNYRLGELAATVEGELENPVLEAELGFGESIEKSSLGLAVPYS
ATIDRNTGDLWVNNVKLFGGDNKLYRYSAEGKLIGEVIDFSAMLPENALVTDLAFNSRTG
MLWQAALFADNCIHEIDPNKLMVTGKRICPGVGGISGLAYDPVSGDFIAGVSNKMSISYF
NEDGEVHLTKDVGIAPAGLAYNSATGHLFISTNGPADPGSEKVDQALDIYTVDSHDDFRM
IGALDVPGMSNYGQTGLDIDCDGNLRLVDIEGSKMFTVSSGETGVCDHKDVTWLDVSHTS
GQLSVAGEQEVTFDVDTSDLAPGVHQVQLLLQSDTPYGTQAIPLSLTVEAKVPGAVGFKA
TSYEVNEADGSVTLMVERLGGVDGEVSVNYRAVDGTATAGEDFTLAEGTLIWADQDAAAK
EIVVAISADDKEEATESFSLVLSSDDEQVAVSDNSIANVNIVDNTSSSKGGAGLQLLLGA
LLAFGWRRRVNR
NT seq
4539 nt
NT seq
+upstream
nt +downstream
nt
atgggtatcaaaaagtcaacatggcaaggctgcagctctgtggggctagcgggattattg
gcgacggtcagcgccttttcttgtgcagccagctctccggtcgtcggggagtcattgaac
caagcgtcgtcgacacctttggtgaaactcgccaacaagatgctggtgagtaataaacta
aaattccaaccgacagctcagaccaaactggccaaacctagcatctcggcgtcgaaccag
gcgctgatggaagcccaataccaggagcagatggcctcggccgtggcactggaacagtac
agcgacaccgcggtgcaagccgagccaggctcgggcgccatgccggcccccgagctgaac
ttcgatggcctgacccgtagcggtttcgatgaggcaccaatgcctgatgcggcgggcgat
gtcggccgtgaccactatgttcaggtggttaacatggcgtttgccgtgtgggacaaagag
ggtaacctgctggttgaccgcaccccgatgacagagttctggaagcgtctgggcggtgtc
tgtggcgaccctaatgccaacccggctcccgctaaaccctgggagagcccgaccactgag
cgtgagcctatcgtgctttacgatcagctcgccgaccgctgggtcgtgacccaaaacgcc
tatgtctcgggtaaagagagccgtcagtgtttcgccgtctcaaagaccagcgatcctacc
ggcgactggcatctgtatgaatttgaattaaacggcgacaagtggcacaacggcgcccag
ctcggcgtatggagcgacggttactatctgtcggccaatcaacacaacaagagcgacaac
agcaaagccggcaccgccgccgtggtgtttgagcgtgacaagatgctctacggcgtaccc
gcacgttctatctatttcgatgcgccgctgacagctaacctgctgccggtggatctcgac
ggtaagcgcgcccctgccgccggtacccctaactacttcctcagcctgcaggacgacaag
gtccatggcagcgcccaggatgagatccaggtgtgggccttcaaggccgactggaacaac
ccgcaaaacagtcagttcagccaggttgccgcgctggcgaccgagccattcgatatcaat
gaggcctgtggcaatacctgtatcgagcaggattcctggggcggcgattcttacaacgcc
ctgaaagcctaccaggataagctgatgtaccgcgccgccttcagacaatttggcgatcac
cagagcctggtggttaaccatacggttgacgtgggcgagcaacacttcggcgtacgttgg
tatgagatccgcaacctgggtgcaggtgccgagatcttccagcagggcagctatgcccct
gatgttaaccaccgctggctggcgagtatggcgatggatgcctcgggcaacataggcatg
ggttttgccatctcgggtgaagagatgctgccttctgtacgctataccggtcgcctgaat
ggcgatccactgggtcagatctcattggctgagcaggtgctggtggacgccgaggcggcc
caggtgaactccttcgatggtcactatggtaagcgcagcatgatgacaatcgatccgacg
gacgattgtagcttctggtatacccaggaatatggcgccgaccatgacttcgagtctatg
tgggctacccgtatcggcaagttcagcttccctaactgtgtggccgatcctaccggtatg
cttcacggtgtggtgaccgacagcgtcactggcctgccactggcgaacgccgaagtggtt
gccggaccttacagcactgtggccgatgaggaaggtaagtatcagctgcaactgcctgtg
ggtgattatcaggtgtcggcccgtgcctacggtcataccaaggcgagtcagggcagtgtc
tctgtggccaaggatgccgatcttgagcgcaacgtggtcttgaccgagatgcctcaggta
acgatttcgggcaagatcagcgatggttcaggccacggctggggcgtacccggtgcgatc
agccaaaacggtgagctgatccctactatgcctattgctaccgatgcgatcgatggcagc
ttcagcgtcgtaggctacgaaggctggcccgtggcgatcaccgcccgtgcacctggctat
cagccagagaccatggatctggtgcctggtagcgatggcgtgagtggtctcgcctttaac
ctggcggtagacaagcaggtctgtagcgccctgggttatcgcaagatagataccaatacc
gcatcactggtgaactttgaatcgccagacttcccgcctcagggctggacagtggtcgat
gccgcgggtactggcattgtctggaagaccaacgagcagtgggaacgtcctaacaacacc
acgggtgaggggcttgcggcctcgatcgacagtgataagggcggccgtaaggcatacgac
tcatcactgttaacgcctatcatgtcggtcgccgagctgggcggcttcaccacggtgcgt
ttcaaggagggcttccgcccatccggcgactcggccctggacatggatatcagcgtcgat
ggcggcgagtggcagaccctgcactcggccaatgccagcgaacaaggcactgtggttaac
gtcgatatcggcgaagccttggtgggcggtagcaacttccgtctgcgttggcgctaccat
aatgccaacgaattcgcctgggattggtgggcgcagatcgacgatgtcgagtttggtctg
ggctgctccatggagcagggtggtctggccgtgggtaacatcacagacgccaacacccaa
gaggcgatcgcacaggccaaggtatggctaggcgatactcaggtagcgaccaacaccgaa
gggcaatatcgactgtttgaaagtgctggtaatcaggtgatctcggcaacccagagtggc
tatggcgtgagcaacagtcagttgacggttaccgacaataagattgccgtacagcacctt
agccttaaggcgggtatgctggaagtggacaagccagagcttgcagcaaccgtgcgtagc
ggtaagcagagcgagctgagcctgacggtgaagaacgtaggtagccgaggagtgaactac
cgactgggtgaactggcggcgaccgtcgagggcgagctggaaaatcctgtgttggaagca
gagcttggctttggcgagtctatcgagaagtctagcctgggactggcggtaccctacagc
gcgactatcgaccgtaacaccggagacctctgggttaacaacgttaagttgtttggtggc
gacaataagctgtatcgctatagcgccgagggtaagctaataggtgaagtgatcgacttc
agcgccatgctaccagaaaacgctctggtgaccgatctggccttcaacagccgcaccggc
atgttgtggcaggcggcgctgtttgccgacaactgtatccatgagatcgatcctaataag
ctgatggtgacaggtaagcgaatctgcccaggcgtgggtggcatctcgggtctggcctat
gatcctgtatcgggtgacttcatcgctggtgtttctaacaagatgagcattagttacttc
aacgaagatggcgaagtgcatctgaccaaggacgtcggcattgcgcctgcgggtctggcc
tacaactcggctacgggacacctgtttatcagtaccaatggtcctgcagatcccggttca
gagaaggtggatcaggcgctggatatctacactgtggatagccatgacgacttccgcatg
atcggcgcgctcgatgtccctggcatgagcaactatggtcagacgggtctggatatcgac
tgtgacggcaacctgcgtctggtcgatatcgaaggcagcaagatgttcaccgtctcctct
ggtgagaccggcgtgtgcgaccataaggatgtgacctggcttgacgtgtctcacaccagc
ggtcagctgagtgtggccggtgagcaagaggtgaccttcgatgtcgataccagcgacctg
gcgcctggcgtgcatcaggtacagctactgctgcaaagcgatactccatatggtactcag
gcgattccgctgtcactgacggtagaagccaaggtgccgggcgccgtgggctttaaggcc
acaagctatgaggtgaacgaggccgatggcagcgtgaccctgatggttgagcgtctcggt
ggtgtcgatggtgaggtgagcgttaactaccgcgccgtcgatggtacagccactgccggt
gaagacttcaccctggcggaaggtacgctgatctgggccgaccaagacgctgcggccaag
gagatagtggttgccatcagcgcggacgacaaggaggaggcgaccgagtccttcagcctg
gtcctgtcgagcgatgatgagcaagttgccgtctctgacaacagcattgccaacgtcaac
attgtcgataacaccagctcgtcgaaagggggcgcgggtctacagctactgctgggtgcc
ttgctcgccttcggatggcgcagaagagtgaatcgttaa
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