Synoicihabitans lomoniglobus: PXH66_08730
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Entry
PXH66_08730 CDS
T09702
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
slom
Synoicihabitans lomoniglobus
Pathway
slom03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
slom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PXH66_08730 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slom03400
]
PXH66_08730 (mfd)
Enzymes [BR:
slom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PXH66_08730 (mfd)
DNA repair and recombination proteins [BR:
slom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PXH66_08730 (mfd)
BRITE hierarchy
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
DUF5914
Motif
Other DBs
NCBI-ProteinID:
WED66933
LinkDB
All DBs
Position
2205541..2208957
Genome browser
AA seq
1138 aa
AA seq
DB search
MSVSASRPQLTGVCPPARGAVLAQHLRDCAAPVWLVVAPDLKIAEQLAEDIAFFAEASGH
SPLPGILVLPESMPTDGDMREAFAASADRTTVLSRLRATRGVSKLTGGKVGPLVVITFPA
ALIQPVPALESFARNELELKPGNTLGFDALLAKLHELDYDSEPLCESPGHYAVRGGLIDV
YPITANEPYRLDFFGDELEEIRAFDPVSQRSGATVPKITLSASPRLKLDPARTGLADYLS
PATRLIFIEPAELEARFSTLAADRGDAAINPVISALLDRSAALAAVQDLDEASFWFESST
GPEHTWNTESLVHYRRYPGDGLVAQERLHAESEARHEFLAQLVTWQREGYAIHIVTAKSG
EEDRTREILAEESGIAALKPTFDRGALNEGFRLTFRDDATLTWRGFGKKTRGLVMVTETE
IFGRSRPRRPSLSQRALVQRAQVDQLLDFADLVEGDFVVHLQHGIAHYRGLTKIETRDGV
REVISLEFDDHVTLHVPLQESHLISRYVGLSKSKPQLGRIGTARWEKARKAAERSTVDLA
AELLRLQAARDAEPGFAHPPDTTWQQEFESSFPYTETPDQLRAIDEAKADLERSRPMDRL
ICGDVGFGKTEVAIRAAFKAVQGGKQVAILIPTTVLAQQHLNSFRERMAGYPIAVEMVSR
FRTRKEQTSILAATAAGQVDILIGTHRLLQKDVKFKDLGLVIIDEEQRFGVKHKERFKAM
RASIDVMAMSATPIPRTLYMALTGARDMSVIETAPTNRHPIQTIVKTYDDKLVVDAVRRE
VARGGQVFYLHNRVQTIEVVAAHLAELMPEIKIGVGHGQMDEKTLEKRMTDFVAGDYQLL
VCTTIIESGLDIPNCNTIIIEGADRFGLSQLYQLRGRVGRFKHQAYAYLLLHRHTRLVEI
ARERLSAMRTHNQLGAGFRIAMRDLELRGAGNLLGSEQSGHIVGVGFELYCQLLRQSVAR
LKGEKQATSIRATVKLDFVFVGDGAAGGADRGRHRDGYTAIRDAEHAASGAVAVAHIQAR
LPADYIGETRLRIDFYRRLAMAGSLDELKQLQSDLRDRFGKFGEPVKALLLVTEIRIRAE
QKGIVSVETQSTKLKCLRASGQSDDWVMHGARFPRLTAPKPLLRLREISTFLDNLPHP
NT seq
3417 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtttccgcctcccgtccccaactcaccggtgtctgtcctccggcccggggcgcg
gtattggcgcaacacctacgcgactgcgcggccccggtgtggttggtcgtcgcgccggat
cttaaaatcgccgaacaactggcggaggatatcgcctttttcgccgaggccagcgggcat
tcgcccttgcccggcatcctcgtgctgcccgaatccatgcccaccgacggcgatatgcgg
gaagctttcgcggcctcggccgatcgcaccacggtgctctcccgactgcgcgccacacgc
ggcgtgagcaaactcaccggcggaaaagtggggcccctcgtcgtcatcaccttcccggcc
gcgctcatccaacccgtgcctgcgctggagtcgtttgcccgcaacgagctcgaactcaaa
ccgggcaacaccctcggattcgatgccttgctcgcgaaacttcatgagctggattacgac
tcggagccgctgtgcgaatcccccggccactacgccgtgcgcggcggcctgatcgacgtt
tatcccatcaccgccaacgagccctaccgcctggatttctttggtgatgagctggaggaa
attcgagccttcgaccccgtgtcacagcgatccggtgccacggtgccgaagatcacgctc
agcgcttcgccgcgcctcaagctcgatcccgcgcgcaccggactggccgattatttgtcg
cccgccactcgactgatcttcatcgaaccggcggaacttgaagcgaggttctccaccctc
gccgctgatcgcggcgacgcagcgatcaatcccgtgatctcggccctgctcgatcgcagc
gcggccctcgccgccgtgcaggatctcgacgaagcgtcgttctggttcgagtcgtccacc
ggccccgaacacacttggaacaccgagagtctcgtgcactatcgccgttaccccggcgac
ggactcgtggcgcaggagcgtctgcacgccgaatccgaagcccggcacgaattcctcgcc
caactggtgacgtggcaacgcgagggttacgccatccacatcgtcaccgccaagtccggt
gaggaagaccgcacgcgagagattctggccgaggagtcgggtattgcggcgctgaagccg
acctttgatcgcggcgcactcaacgaagggtttcgcctcacatttcgcgacgatgccacg
ctcacctggcgcggtttcggcaagaaaacccgtggcctcgtcatggtcacggaaacggaa
attttcggccgcagtcgtccccgccgcccgtcgctttcccagcgcgccctcgtgcaacgc
gcgcaggtcgatcagctgctcgactttgccgacttggtcgaaggcgactttgtcgtccat
ctccagcacggcatcgcccactaccgggggctgaccaaaatcgagacccgcgacggcgtt
cgcgaagtcatatcgttggagttcgacgaccacgtcaccctgcacgtgccgctgcaggag
tcgcacctcatcagccgttacgtcggcctcagcaaatcaaagccgcagctcggtcgcatc
ggcacggcgcgctgggaaaaagcccgcaaagccgccgagcgctccaccgtcgatctcgcc
gccgaactgttgcgcttgcaggccgcacgcgacgcggagcccggcttcgctcatccgccc
gacaccacgtggcaacaggaattcgaatcctcttttccttacaccgaaactccggaccag
ctgcgggccatcgacgaggccaaagccgacctcgaacgcagccggccgatggaccgtctc
atctgcggcgacgtcggtttcggcaaaaccgaagtcgccatccgcgccgccttcaaagcc
gtgcaaggcggcaaacaggtcgcgatcctgattcccaccaccgtgctcgcgcagcagcac
ctcaattcttttcgcgaacgaatggcgggctacccgatcgcggtggaaatggtgagccgt
tttcggacgcgcaaggagcagacgtcgattctcgccgccaccgccgccggtcaggtcgac
atcttgatcggcacccatcggctactgcagaaggacgtaaagtttaaggatctgggcctc
gtcatcatcgacgaggaacagcgttttggggtgaaacacaaagagcgtttcaaggccatg
cgcgcctcgatcgatgtcatggcgatgagtgccaccccgatcccgcgcacgctctacatg
gcactcaccggcgcccgcgacatgagcgtgatcgaaaccgcaccgaccaatcgtcatccc
attcagaccatcgtcaaaacctacgacgacaaactcgtggtcgatgccgttcgccgcgaa
gtcgcgcgcggcggacaggtgttttatctgcacaaccgcgtgcagaccatcgaagtcgtg
gcggctcacctcgccgaactcatgcccgaaatcaagatcggggtgggccacggtcaaatg
gacgagaaaaccttggaaaagcgcatgaccgatttcgtggcgggcgactaccaactgctc
gtctgcaccacgatcatcgagagcgggttggatatccccaattgcaacacgatcatcatc
gaaggcgccgatcgcttcggtctgtcgcaactttaccagctgcggggtcgcgtcgggcgt
ttcaagcatcaggcctacgcctacctgttgttgcaccgccatacccgcctggtggagatc
gcccgcgaacggctcagcgccatgcgcacgcacaaccaactcggcgcgggttttcgcatc
gccatgcgcgatctcgagctgcgcggggcgggtaatctgctcggatccgaacaaagtggc
cacatcgtgggcgtcggtttcgagctgtattgccaactcttgcgccaatccgtcgcccgc
ttgaaaggcgaaaaacaagccacctccatccgcgcgacggtgaaactggacttcgtcttc
gtcggcgatggtgccgccggcggcgccgatcgcggccgacatcgggacggttacaccgct
atccgcgacgccgaacacgctgccagcggagcggtggcagtggcgcacatccaggcgcgg
ttgcccgccgattacatcggggaaacccgcttgcgcatcgatttttatcgccgactcgcc
atggccggttccctggacgagctcaaacaactgcaaagtgatttgcgcgaccggtttggc
aaatttggcgaaccggtgaaagcactcctgctcgtcaccgaaatccgcattcgggcggaa
caaaaaggcatcgtttcggtcgagacccaaagcaccaaattgaagtgcttgcgggcaagt
ggtcagagtgatgactgggtcatgcacggcgcccggtttccgaggttgaccgcccccaag
ccccttctacggttacgagaaatatctacgtttttagacaatctgccgcatccatga
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