Syntrophothermus lipocalidus: Slip_1510
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Entry
Slip_1510 CDS
T01253
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
slp
Syntrophothermus lipocalidus
Pathway
slp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
slp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Slip_1510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slp03400
]
Slip_1510
Enzymes [BR:
slp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Slip_1510
DNA repair and recombination proteins [BR:
slp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Slip_1510
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ADI02273
UniProt:
D7CNI8
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All DBs
Position
1567312..1568214
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AA seq
300 aa
AA seq
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MCLPVVVVEGEKLELTNLSKVMWPEENITKADFIDYCVRIAPYILPHLKDRPLVFTRYPD
GIYGKAFYQKNVPDYAPDWLMTYDEEINDGNRRKLVRYVLIKDLKSLVWAANQASLEMHP
WLSRAGTIDHPDFVVFDLDPMENTGFEDARQLALALKRLLEMEGLKGFPKTSGATGLQVY
VPVEARYTYRQVRTFAEFFCRVLEKTFPEKATTERSIKDRRGKVYLDYLQNVKGKTLIAP
YSPRPLAEATVSAPVTWDELESGAVPSMFKIRNMAERLEKMGDLFRGVLEEKQRIDRRLQ
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
ttgtgtttgccggtggtagtcgttgaaggcgaaaagctggaactgacaaacctctcaaag
gtgatgtggcctgaggaaaatataacaaaagctgattttatcgattactgcgtgcggata
gctccctacattctaccccacctcaaggatcgccccctggttttcacgcgctaccccgat
ggaatatacggaaaggctttttaccagaagaacgtacccgattacgctccggactggctc
atgacttacgatgaagaaattaatgacggcaaccggaggaagctggtcaggtatgtactc
ataaaggatctgaaaagccttgtctgggccgccaaccaggccagcctggagatgcatccc
tggctttcccgggcggggaccatcgaccacccggacttcgtggtcttcgatcttgacccc
atggaaaatacaggtttcgaagatgcccggcagctggcgctagccttgaaaagattgctc
gaaatggaagggctgaagggcttccccaagacttccggcgctaccggcctgcaggtctac
gtgccggtggaggccaggtacacctaccgtcaggtcaggacctttgccgaattcttctgt
agggtgctggaaaagacttttccggaaaaagccacgacggaaaggagtataaaagaccgc
aggggtaaagtgtacctggattatctgcaaaacgtgaagggcaaaaccctgatagcaccg
tacagcccaaggcctctggcagaagcaacggtttccgcaccggtcacatgggatgaactg
gaaagcggcgcggtgccctccatgttcaaaatccggaacatggctgaaaggctggaaaag
atgggggatctgttcaggggtgtcctggaagaaaagcagcgcatagaccggcggctgcag
taa
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