Salinispira pacifica: L21SP2_2106
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Entry
L21SP2_2106 CDS
T03013
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
slr
Salinispira pacifica
Pathway
slr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
slr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
L21SP2_2106
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slr03400
]
L21SP2_2106
Enzymes [BR:
slr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L21SP2_2106
DNA repair and recombination proteins [BR:
slr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
L21SP2_2106
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AHC15473
UniProt:
V5WI55
LinkDB
All DBs
Position
complement(2253310..2256810)
Genome browser
AA seq
1166 aa
AA seq
DB search
MKSLLYSSFSPLLKAYRPYKELFAAMQKNMYPLHLYGVHGGLLSMIFAKTRERLNAPLLI
VLPTEKEAEALSDDLERFGLNTAILPWWGTVPYRTVPANSPMFGRRLRVLDGILDGSIDV
VFCGLRSFLSPLPPPGYLRAGYIEVSRGMSFDPGEFARALEKLGYMRVQRVSVPGEFALR
GEVCDVYMAGDENPVRIVFGWDEIEQIRRFDAGSQSSIDELKQISIRPSSEIVWDEERIA
VLSSRLEQLPELRHQREEIIDQWIIPRKEGHERFFPLAFPEDEQASILDYLGEKSIGFIA
EYERCYSAEESLHREYGGMYRKLRHGEPLPRPERLLFELETLENEIHRPVRMPLLKSAHP
EQHVSGQLGSEEENPLLQEVAPIDRSRRAELQPAASQIQFDSAGARSFFGNISFFKEELE
NMLQAGYSIYLLADSDVQRSRLEHLLKDYDITILAESISSGFSIQDLSVMVIHENEVFGR
KRRVPKSVKKVKSEAIDSFVELDEGDHVVHVNHGIGRFRGIQRITAGGNERDYIKLEYAK
EEYIFVPIEQVNLIQRYIGSQGADPRLDTIGGKSWEKRKSKVSKHVEDLAERLLTLYSRR
KKASGYAFPPDNEWQIEFEAAFPFEETEDQVRCIDEVKADMERPVPMDRLVCGDVGYGKT
EIAMRAAFKAVSSGRQVAFLAPTTILAEQHYESLLERAAEFPIKIRMMSRLVSRKDQRQT
LEGLASGEIDMVVGTHRIIQKDMQFKNLGLLVIDEEQRFGVKDKERLKELKASIDCLTMS
ATPIPRTLHMSLLKIRDMSLLKTPPHNRRPIETHVEAFNEELVAKAIRNEVERGGQVFYL
HNRVETLENVQLFLQNAVPEVMVDVAHGQMSPHELEDIMHRFVHGGFQVLVATTIIENGI
NIPNVNTIIIDRADMYGISQLYQLRGRVGRSGRLAYAYLLYPEQRALSELAMKRLQIISD
HTELGSGFKIAMKDLEVRGAGNLLGSQQSGDIYSIGFDLYLKLLDQAIRRLSDLGEEDLQ
EVYLEMEYTGFIPDSYISDTMEKMEVYKRIAAVNTQELLDAVHSEIADRFGPIPEEVASL
LSLAEIRVLCRDLNISMLRERKGTAEVHFAKVAKLNINKIMELIRTSGGAVKIDPKRPEV
LLVDTSKVGLKEKSEYLRDRLSTIAG
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcattattgtattccagtttttcacccctgttaaaggcataccggccttataag
gaacttttcgcagccatgcagaagaatatgtaccccctgcacctctacggggtgcacggc
ggtcttctgagcatgattttcgcgaaaacccgggaacgtctgaatgcaccgctgctcatt
gtgctgcccaccgaaaaggaggcggaggctctttccgacgaccttgagcgtttcgggctg
aacaccgccattcttccctggtggggcaccgttccctaccgcacggttcccgccaactct
cctatgttcggccggaggctcagggtgctggatggaattcttgacggaagcatagatgtg
gtgttttgcggactccgcagttttctgtcgcccctgccgcctcccgggtatctcagggcg
gggtacatcgaggtctcccgggggatgagttttgatcccggtgagttcgcccgggctctg
gagaaactgggctacatgcgggtgcagagagtttcggtccccggggagttcgccctgaga
ggggaggtgtgcgatgtgtatatggcgggggatgaaaacccggtgcggatcgtgttcggc
tgggatgaaatcgagcagatccgccgtttcgatgcgggaagccagagttccattgatgaa
ctgaaacagatatccatccgcccaagcagcgaaattgtctgggatgaggagcgcattgcc
gttctcagctcccgcctggagcagcttccggagctcaggcatcagcgggaagagatcatt
gatcagtggattattccccgaaaggaggggcatgagcggtttttccccctggcgtttccc
gaagatgagcaggccagcattctggattacctgggggagaaaagcatcggattcatcgcc
gaatatgagcgctgctacagcgcggaagagagtcttcaccgtgaatacgggggaatgtac
cgcaagctgaggcatggcgaaccgctgccccggcccgagcggctgctgtttgaacttgag
accctggagaatgaaatccaccggccggtgcgcatgcccctgctcaaatcggcccatccc
gagcagcatgtgagcgggcagctcggcagcgaagaggagaaccccctgcttcaggaggtg
gctcctatagaccgcagccgccgggcggagcttcagcccgcagcatcccagatccagttt
gattctgcgggtgcacggagcttcttcggcaatatcagctttttcaaggaagagctggaa
aacatgcttcaggcggggtacagcatctatctccttgcggattcggacgttcagcgctcc
cgtcttgagcatcttctgaaagactacgatattaccattctggcagagagtatctcatcg
ggattcagcattcaggatctttccgtgatggtgattcacgagaacgaagtgttcggccgg
aaacggcgggtgcccaagtctgtcaagaaggtgaagagcgaagccatcgacagttttgtg
gagctggatgaaggcgatcacgtggtgcatgtgaatcacgggatcggacgcttccggggc
atccagcgcatcaccgccggagggaacgagcgggattatatcaaacttgaatatgccaag
gaagaatatattttcgttcccattgaacaggtaaacctgattcaacgttacatcggaagc
cagggcgccgatcccaggctggataccatcgggggaaagagctgggagaagcggaaatcc
aaggtatccaaacatgtggaggaccttgccgagaggctgctcaccctctacagccggcgg
aaaaaggcatcgggctacgcattccccccggataacgagtggcagattgagtttgaggct
gcgttccctttcgaagaaacggaggatcaggttcgctgtattgatgaggtgaaggccgat
atggaacggccggtgcccatggaccggctggtatgcggagatgtgggatacggaaaaact
gaaattgccatgcgggcggcgtttaaagcggtgagctcgggcaggcaggttgcctttctt
gcccccaccacgattctggcggaacagcattatgaaagcctgctggaacgggcggcggaa
tttcccattaaaatcaggatgatgagccgtcttgtgagccggaaagatcagcgccagacc
ctggagggacttgcttccggggagattgatatggtggtgggcacccatagaatcattcag
aaagatatgcagttcaagaatctgggtctgctggtgatagatgaagagcagcgcttcggt
gtgaaggacaaggagcggctgaaggaactgaaggcgagcatagactgtctcaccatgtcg
gcaacccccatccccaggactctgcacatgagtctgttgaaaatccgtgatatgagtctg
ctgaaaacgcccccccataaccgaaggcccatagaaacccatgttgaagccttcaatgaa
gaactggttgccaaagcgatccggaatgaggtggaacggggcggccaggtgttctatctg
cataaccgggtggagaccctggaaaacgtccagctcttcctccagaatgcggtgcctgaa
gtgatggtggatgttgcccacggtcagatgagcccccacgagcttgaggatattatgcac
cgctttgtgcacgggggcttccaggtgttggtggcaaccaccatcattgaaaacggaatc
aacatccccaatgtaaataccattattattgaccgggccgatatgtacggcatcagccag
ctgtatcagcttcggggacgggtggggcgaagcgggcgtctggcatacgcctacctgctc
tatccggaacagagagccctgagtgagctggccatgaagcggctgcagattatcagcgat
catacggaactggggtccggcttcaagattgccatgaaggaccttgaggtccggggtgcg
ggaaatcttctgggaagtcagcaaagcggagatatctacagcatcggttttgatctttat
ctgaaacttctggatcaggcgatccggcggctcagcgatctgggcgaagaggatcttcag
gaggtgtatctggagatggagtacacgggattcatccccgacagctacatttccgacacc
atggagaagatggaggtgtacaagcggattgcagcggtgaatacccaggagctgcttgac
gccgtacactcagaaatcgccgaccgtttcggtcccatccctgaagaggttgcaagtctg
ctcagtctggcggagatcagggtgctgtgccgggatctgaatatctccatgctccgggag
cggaaaggaactgcggaggtacatttcgccaaggtcgccaagctgaatatcaataaaata
atggaactgatccgcaccagcggaggagcggtgaaaatcgatcccaagcggccggaagtt
ctcctggttgataccagcaaggtgggtctgaaggaaaaaagcgaatacctgcgggatcgt
ctgtccacaattgccggctga
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