Sander lucioperca (pikeperch): 116040574 Help Entry 116040574         CDS       T07345                                  Symbol lig1 Name (RefSeq) DNA ligase 1 isoform X1   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism sluc  Sander lucioperca (pikeperch) Pathway sluc03030   DNA replication sluc03410   Base excision repair sluc03420   Nucleotide excision repair sluc03430   Mismatch repair Brite KEGG Orthology (KO) [BR:sluc00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     116040574 (lig1)    03410 Base excision repair     116040574 (lig1)    03420 Nucleotide excision repair     116040574 (lig1)    03430 Mismatch repair     116040574 (lig1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:sluc03032]     116040574 (lig1)    03400 DNA repair and recombination proteins [BR:sluc03400]     116040574 (lig1) Enzymes [BR:sluc01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      116040574 (lig1)     6.5.1.6  DNA ligase (ATP or NAD+)      116040574 (lig1)     6.5.1.7  DNA ligase (ATP, ADP or GTP)      116040574 (lig1) DNA replication proteins [BR:sluc03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     116040574 (lig1)  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      116040574 (lig1) DNA repair and recombination proteins [BR:sluc03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      116040574 (lig1)    NER (nucleotide excision repair)     Other NER factors      116040574 (lig1)    MMR (mismatch excision repair)     Other MMR factors      116040574 (lig1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C Motif Other DBs NCBI-GeneID:  116040574 NCBI-ProteinID:  XP_031141928 Ensembl:  ENSSLUG00000010207 LinkDB All DBs Position 9:33138074..33200954 Genome browser AA seq 1016 aa AA seqDB search MQRSIASFFQPKCKDKDMQKKSTDGPVKKPVKSPLKVQNGVQKADSPVTKKVAKRSRQIL DSDDDDAPVVKEQVATKAHGDKEALGKTEKKDAVFTAVPTPLSPPPAPATPVTPATPSTL ASSASPGTPGTPNSISPSGIVKRKTARKMFPKRKLDESRSGSESQKDEAEAKEEQGQQNK RARVENSASSTGNTDEPMEEDAKEERVEKAVAVANSPDEEEVKKKKEREEEEKAKEEERV KPTSSDEKEKKAEGVENEEEAKEKTDDEKRPAVAKKKEAVEKDTREGEGSPKSQTARKQK EAKEQKDKEPPKKAPISSFFAPRKAAVKTEKAEESEGEKKTSAERKPSAEDSKDTKSEST SGQTDYDPSRPKYHPVDHACWKQGQKVPYLAVARTFEKIEEDSGRLRNIETLSNLLRSVL LLSPDDLLCCVYLCLNQLGPAYLGMELGVGETVLMKAVAQATGRQLDKIKAEAQEKGDLG LVAESSRSNQRMMFQPASLTAGGVFRKLKEIASMSGNSAMNKKIDIIKGLFVACRFSEAR YIVRSLAGKLRIGLAEQSVLSALSQAVCLTPPGQGFPPAVIDAGKGMSTESRRAWIEEKS LILKQTYCEMPNYDVIVPVLLKEGIDELPNHCKLTPGVPLRPMLAHPTKGVGEVMKRFDE AAFTCEYKYDGERAQIHILESGEVRVFSRNQEDNTSKYPDILSRIPKVKKDSVVSCVLDS EAVAWDREKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVRQPLSRRRA LLKESFSEVEGEFVFARSIDSDNTDAIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSH NWLKLKKDYLDGVGDTVDLCVIGAYLGKGKRTGTYGGFLLACYDEDNEEFQSVCKIGTGF KDEDLEQHYKFLKEHILPKPRAYYRIDQSAEPDVWLDAVQVWEVKCADLSLSPVYKAAMG MVDPEKGISLRFPRFLRIRDDKKPEDATTGAQIADLYKKQQQIQNQGEKADPEDYY NT seq 3051 nt NT seq  +upstreamnt  +downstreamnt atgcagcggagcatcgcatccttctttcagcccaagtgcaaggacaaggatatgcagaag aaatccacagatggaccagtgaaaaaacctgtgaaaagccctctgaaggtgcagaacggt gttcagaaggctgattcacccgtcaccaagaaggttgccaaacgcagccgtcagatcctg gacagcgacgatgacgacgctccggtcgttaaagagcaggtcgccaccaaggcacacgga gacaaagaagctcttggtaaaacagaaaagaaggatgctgtctttacggcagttcccacc cccctgtctcctccacctgccccggccactcctgtaactcccgctactccatccaccctg gcttcttcggcttcacccgggacccctggcaccccaaactccatctccccttctggcatc gttaaacgcaagactgcgaggaagatgttccccaagaggaagctggatgagagcaggagc ggcagtgagagtcagaaagacgaagccgaggccaaggaggagcagggtcagcaaaacaaa cgcgcccgtgtggagaacagcgccagcagcacagggaacacagacgagcccatggaggag gacgcaaaggaagagagagttgaaaaggcagtggccgtggctaacagcccagatgaggag gaggtgaagaagaagaaggagagagaggaagaagagaaggccaaggaggaggagcgggtg aagccaacgagctctgatgagaaggaaaaaaaagctgagggggtggaaaatgaagaggaa gcaaaggagaagacagatgatgagaaaaggcctgccgttgccaagaagaaggaggcggtt gaaaaggacacgcgagagggagaagggagcccaaaaagtcaaacggcgagaaagcagaaa gaagcaaaagagcagaaagataaggagccgcccaagaaagcccccatcagcagtttcttt gctccaagaaaagctgcagtgaagacggagaaagcagaggagagtgaaggggagaaaaag acgagtgcagagaggaagccctcagcagaggacagtaaagacacgaaaagtgagtcgacc tccggacaaacagactacgatccgtccaggcccaaataccatcctgtggaccatgcctgc tggaagcagggccaaaaagtgccgtacttggcggtggctcgcacctttgagaagattgaa gaggactctggcaggctgagaaacatcgagacgctgtcgaacctgcttcgctccgtgcta ctgctctctccagatgacctgttgtgctgtgtgtacctgtgtttgaaccagctcggtcct gcctacctggggatggagcttggtgttggagagacggtgctaatgaaagctgttgctcaa gcaactgggcgacaattggacaaaatcaaggcagaggcgcaggagaaaggagatttgggc cttgtggccgagagttcccgtagcaaccagcgcatgatgtttcagccggccagtctgaca gcagggggcgtgttcaggaaattgaaggaaattgcgagcatgagtgggaactcggccatg aataagaaaatcgacatcatcaaaggcctctttgtggcgtgccgcttttccgaggcccgc tatatagtcaggtccctggctgggaagctgaggataggcctggctgagcagagtgtccta tctgcactgagccaggctgtgtgcctgaccccccctggacaaggtttccctcccgctgtg atcgacgcagggaagggtatgagcactgagagcaggcgggcctggatcgaagagaagagt ctcattctcaaacagacttactgcgagatgcccaattacgacgtcatcgtccccgttctg ctaaaagaaggcatagacgagctacccaatcactgcaagctcactccaggtgtgccgttg agacccatgttggcccaccccaccaagggtgtcggtgaggtgatgaagaggtttgacgag gcggcgttcacctgcgagtacaaatacgatggagagcgagcacagattcacattctggag agtggcgaggtacgcgtattcagccgcaaccaggaagacaacaccagcaaataccccgat atcctctctcgcattcccaaggtgaagaaggactctgtggtgtcgtgcgtcctggactca gaggcggtggcctgggatcgggagaagaaacagatccagcccttccaggtcctcaccacc cgcaagagaaaggacgtggatgcttctgagatcaaagtccaggtgtgcgtgtacgccttt gacctgctctatctcaacggcgagtcgctggtgcgacagccgttgagtcggcgtcgggct ctgctgaaagaaagcttctcagaggtggagggagagtttgtgttcgcccgatccatcgac tccgacaacaccgacgccatcgcagagttcctggagcagtctgtccgagactcctgcgag ggtctaatggtgaaaactctggagaaggatgccacctatgaaattgccaagcgctctcac aactggctcaagctgaagaaagactacctggacggcgtgggcgacacagtcgacctgtgt gtgatcggcgcctacctgggaaaaggcaagaggacaggcacctacgggggcttcctgctg gcctgctacgacgaggacaacgaggagttccagtcagtctgcaagatcgggacaggcttc aaggatgaagatctggagcagcattacaagttcttaaaggagcacattctgcccaagccc cgtgcctactaccgcatcgaccaatcagcagagcccgatgtgtggctggacgccgtgcag gtttgggaggtgaagtgcgccgacctgtcgctgtcgcccgtctacaaggctgctatggga atggtggatccagaaaagggcatttctctgaggttccctcgcttccttcggatcagagac gacaagaagcccgaggacgccacgaccggagctcagattgctgatttgtacaagaagcag cagcagattcagaaccagggtgagaaagcggacccagaggactactactga

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